ViewGene

Locus Name:
GeneID:
Location:

GeneID:3679
TrivialName: PA14_53230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53230
PAO1 Ortholog Locus:PA0853
Sequence Length:624
Protein Length:207
Start: 4718879
Stop: 4719502
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04242.1|AE004520_5 (AE004520) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 205/207 (99%), Positives = 206/207 (99%)
Sequence:
ATGGTTGAAACCGCCAAGTCCGGCGCCACCCCGCTGGAAGGCGACGGCAAGCGCATCCTGCTGATCGTCGGC
TCGCCCAAGCGCAAGAGCTTCTGCCACCTGCTCGCCGAATGCTACGCCCAGGGCGCGCGCAGCAAGGATCAC
GTGGTGCGCGAACTGAAACTGGGCGAACTGGCCTTCGACCCGATCCTCCACGAAGGCTACGAGCAGAGCCAG
GTGCTCGAACCTGACCTGCTGGAAGCGCAGCGGCAGATCCACTGGGCCGAGCACCTGGTGTTCGTCTACCCG
GTCTGGTGGGGCGGCCTGCCGGCGCTGCTGCAGGGTTTCTTCGACCGCGCCCTGCAGCCGGGCTTCGCCTTC
CGCTACCGCGGCACCCAGGACAAGGACTGGGAGCAACTGCTGGGCGGGCGCAGCGCCGACCTGCTGGTCTGC
CACGACCAGCCGCTGTCGCGGCTGCGCTTCCTCAAGGGCccgccgGCGCACCGGCAGATGGTGCGCAGCGTG
CTCGGCGCCTGtggCATCGCCacccgccGcctgGaagAgttcGCgccgaTGCGCagtTccaGCGAGGAACAG
CGCCAGGGTTGGCTGCGTCGCGCCGAACAGCTCGGCAGCCAGGTCTAG
Translation:
MVETAKSGATPLEGDGKRILLIVGSPKRKSFCHLLAECYAQGARSKDHVVRELKLGELAFDPILHEGYEQSQ
VLEPDLLEAQRQIHWAEHLVFVYPVWWGGLPALLQGFFDRALQPGFAFRYRGTQDKDWEQLLGGRSADLLVC
HDQPLSRLRFLKGPPAHRQMVRSVLGACGIATRRLEEFAPMRSSSEEQRQGWLRRAEQLGSQV*
AnnotationID:3687GeneID:3679
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 17:05:39
Gene Name:
Confidence Code:3
GeneProduct:probable oxidoreductase
Cell Localization:()
Synonyms:PA0853
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2249
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam02525, Flavodoxin_2, Flavodoxin-like fold. Score: 157, 2e-39
COG2249, MdaB, Putative NADPH-quinone reductase. Score: 151, 8e-38
Genomic Context:
Comment:
ReferenceID:7361
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:16983
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI Conserved Domain Search.
Reference Type:Blast (text/plain)
Data:PA0853_CDS.cgi
URL:
ReferenceID:24503
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3679

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5882 PA0853_tr translation of PA0853 207 99.03 99.51 0 1088.0
164480 gb|AAG04242.1|AE004520_5 (AE004520) probable oxidoreductase [Pseudomonas aeruginosa PAO1] 207 99.03 99.51 0 1088.0
164481 gb|AAO55250.1| (AE016862) NAD(P)H dehydrogenase, quinone family [Pseudomonas syringae pv. tomato str. DC3000] 207 63.76 77.77 3 690.0
164482 gb|AAN68397.1|AE016472_4 (AE016784) oxidoreductase, putative [Pseudomonas putida KT2440] 217 42.85 56.68 26 452.0
GC ORFID: 46681How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0853Glimmer Score:
Start: 235028Stop: 234405
Length: 624
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0853 translation of PA0853Homolog Bit Score 423.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7701 (ORF: BLASTX 290.0), t_PA0853 (ORF: GLIMMER)
GC ORF Sequence
ATGGTTGAAACCGCCAAGTCCGGCGCCACCCCGCTGGAAGGCGACGGCAAGCGCATCCTGCTGATCGTCGGC
TCGCCCAAGCGCAAGAGCTTCTGCCACCTGCTCGCCGAATGCTACGCCCAGGGCGCGCGCAGCAAGGATCAC
GTGGTGCGCGAACTGAAACTGGGCGAACTGGCCTTCGACCCGATCCTCCACGAAGGCTACGAGCAGAGCCAG
GTGCTCGAACCTGACCTGCTGGAAGCGCAGCGGCAGATCCACTGGGCCGAGCACCTGGTGTTCGTCTACCCG
GTCTGGTGGGGCGGCCTGCCGGCGCTGCTGCAGGGTTTCTTCGACCGCGCCCTGCAGCCGGGCTTCGCCTTC
CGCTACCGCGGCACCCAGGACAAGGACTGGGAGCAACTGCTGGGCGGGCGCAGCGCCGACCTGCTGGTCTGC
CACGACCAGCCGCTGTCGCGGCTGCGCTTCCTCAAGGGCccgccgGCGCACCGGCAGATGGTGCGCAGCGTG
CTCGGCGCCTGtggCATCGCCacccgccGcctgGaagAgttcGCgccgaTGCGCagtTccaGCGAGGAACAG
CGCCAGGGTTGGCTGCGTCGCGCCGAACAGCTCGGCAGCCAGGTCTAG