ViewGene

Locus Name:
GeneID:
Location:

GeneID:3678
TrivialName: PA14_64550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64550
PAO1 Ortholog Locus:PA4883
Sequence Length:615
Protein Length:204
Start: 5750993
Stop: 5750379
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08268.1|AE004901_10 (AE004901) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 201/204 (98%), Positives = 203/204 (99%)
Sequence:
ATGAACCGTGCGTTGCACGCCTGGCCGGTGAGACTCTGCCACTGGCTCAATGCCTATGCCATGGCCTGCCTG
ATCGGCAGCGGCTGGGGCATCTACAACGCTTCGCCGCTGCTGGATTTCCGTTTTCCCGCCTGGGCTACCCTC
GGCGGCTGGCTCGGCGGTTCCATCGCCTGGCATCTCGCCGCCATGTGGCTGCTGCTTGGCAACGGCCTGTGC
TACCTCGCCTACGGACTGTCCAGCGGGCATTTTCGTCGCGACTTCCTGCCTTTGAGCGCGGCCGGCGTCTGG
CGCGACCTGCGCCTCGCCCTCGGCCTGCGCCTGGTCCATGAGCCGGGCCGCTACAACGCGGTGCAGCGCCTG
CTGTACTGGCTGGTCCTGGCGCTCGGTGCGCTGCTGGTGCTGTCCGGGCTGGCGATCTGGAAACCGGTGCAA
CTGCACGGGCTGACCGCGCTGTTCGGTGGCTTCCAGGGGGCGCGCTGGGTGCATTTCCTGGCCATGGCCGGG
GTCGTCGGGTTCGTCGTCGTGCACCTGCTGCTGGTGCTGTTGGTGCCGCGCACCCTGGTGCCGATGATCATC
GGACGCGAGTGGCGGCGCGGGCGGAGGAGCGGAGGATGA
Translation:
MNRALHAWPVRLCHWLNAYAMACLIGSGWGIYNASPLLDFRFPAWATLGGWLGGSIAWHLAAMWLLLGNGLC
YLAYGLSSGHFRRDFLPLSAAGVWRDLRLALGLRLVHEPGRYNAVQRLLYWLVLALGALLVLSGLAIWKPVQ
LHGLTALFGGFQGARWVHFLAMAGVVGFVVVHLLLVLLVPRTLVPMIIGREWRRGRRSGG*
AnnotationID:3686GeneID:3678
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 12:12:44
Gene Name:
Confidence Code:3
GeneProduct:putative thiosulfate reductase cytochrome B subunit
Cell Localization:()
Synonyms:PA4883
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4117
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD14149.1| (AL646060) PUTATIVE TRANSMEMBRANE HYDROGENASE CYTOCHROME B-TYPE
           SUBUNIT OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
          Length = 212

 Score =  196 bits (499), Expect = 6e-50
 Identities = 99/189 (52%), Positives = 128/189 (67%), Gaps = 2/189 (1%)
Structural Features:
COG4117, COG4117, Thiosulfate reductase cytochrome B subunit 
(membrane anchoring protein) 
[Energy production and conversion]
CD-Length = 221 residues,  92.3% aligned
Score =  197 bits (501), Expect = 1e-51
Identities = 95/204 (46%), Positives = 112/204 (54%), Gaps = 5/204 (2%)
Genomic Context:
Comment:
ReferenceID:7359
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24501
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35172
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3678_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3678

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5881 PA4883_tr translation of PA4883 204 98.52 99.50 0 1091.0
164473 gb|AAG08268.1|AE004901_10 (AE004901) hypothetical protein PA4883 [Pseudomonas aeruginosa PAO1] 204 98.52 99.50 0 1091.0
164474 gb|AAO57075.1| (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 211 59.71 69.66 12 671.0
164475 dbj|BAC45771.1| (AP005936) bll0506 [Bradyrhizobium japonicum USDA 110] 220 49.09 60.90 27 550.0
164476 emb|CAE25667.1| (BX572593) conserved hypothetical protein [Rhodopseudomonas palustris] 222 47.29 59.90 28 541.0
GC ORFID: 46680How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4883Glimmer Score:
Start: 5014674Stop: 5014060
Length: 615
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4883 translation of PA4883Homolog Bit Score 424.0
Other Homologs: psyr_15may02_Scaffold9_revised_gene7980 (ORF: BLASTX 269.0), t_PA4883 (ORF: GLIMMER)
GC ORF Sequence
ATGAACCGTGCGTTGCACGCCTGGCCGGTGAGACTCTGCCACTGGCTCAATGCCTATGCCATGGCCTGCCTG
ATCGGCAGCGGCTGGGGCATCTACAACGCTTCGCCGCTGCTGGATTTCCGTTTTCCCGCCTGGGCTACCCTC
GGCGGCTGGCTCGGCGGTTCCATCGCCTGGCATCTCGCCGCCATGTGGCTGCTGCTTGGCAACGGCCTGTGC
TACCTCGCCTACGGACTGTCCAGCGGGCATTTTCGTCGCGACTTCCTGCCTTTGAGCGCGGCCGGCGTCTGG
CGCGACCTGCGCCTCGCCCTCGGCCTGCGCCTGGTCCATGAGCCGGGCCGCTACAACGCGGTGCAGCGCCTG
CTGTACTGGCTGGTCCTGGCGCTCGGTGCGCTGCTGGTGCTGTCCGGGCTGGCGATCTGGAAACCGGTGCAA
CTGCACGGGCTGACCGCGCTGTTCGGTGGCTTCCAGGGGGCGCGCTGGGTGCATTTCCTGGCCATGGCCGGG
GTCGTCGGGTTCGTCGTCGTGCACCTGCTGCTGGTGCTGTTGGTGCCGCGCACCCTGGTGCCGATGATCATC
GGACGCGAGTGGCGGCGCGGGCGGAGGAGCGGAGGATGA