ViewGene

Locus Name:
GeneID:
Location:

GeneID:3677
TrivialName: PA14_58840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58840
PAO1 Ortholog Locus:PA4535
Sequence Length:630
Protein Length:209
Start: 5240946
Stop: 5241575
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07923.1|AE004867_9 (AE004867) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 209/209 (100%), Positives = 209/209 (100%)
Sequence:
ATGAACGAAGCGGATTATCTGCGCCTGCTCACCCGTCAGGCCGAACAAGCCAACGACTTCCTCTCCAACGCA
CGTAAATGGGACCGCGAGCGCTGGGTCTGCCAGCGCTTCCTCGAAGCCCTCAACGTGCCCTATCGCCAGGAG
GATTTCGCCGCCCCCGGGGAACAGCCGCCGGACGTCCTGTTCAAGGGTGCCGGCTTCGAGGTGTTCTTCGTC
CTCGATGAAGGTCGCCGGCTGAACGAGGAGTGGCGCGAGGAACTGACCCGTCGCCGCCAGGCCGTCAGCCTG
CGCCAACTGATCCGCCGCGAAGAGCGGCCACAACGGATCGCCGCCGCCGAGCTGCAGGCACGGCTGGCGCCA
ACCCTGCGCAAGAAGGCGCACAACTATAGCGAGCGCGGCATCGACCACGGCGAACTGGACCTGCTGGCCTTC
GTCAACCTGAaGcGCGCGGTGCCCGATTTCaatACGCCCTTCCCGCCGCCCACCGAATACCTGCGCCAAGGC
TGGCGCTCGCTGTCGATGGTCGGTCCGACCTTTGCCCGGGTGCTCTTCGCTCACTCCGGCGCCCCCGAGTTC
CTGCGCGCCAACCTCGGCCGCAGCATCCTGTTCGACGCCGGGGTAGGCCTGTGA
Translation:
MNEADYLRLLTRQAEQANDFLSNARKWDRERWVCQRFLEALNVPYRQEDFAAPGEQPPDVLFKGAGFEVFFV
LDEGRRLNEEWREELTRRRQAVSLRQLIRREERPQRIAAAELQARLAPTLRKKAHNYSERGIDHGELDLLAF
VNLKRAVPDFNTPFPPPTEYLRQGWRSLSMVGPTFARVLFAHSGAPEFLRANLGRSILFDAGVGL*
AnnotationID:3685GeneID:3677
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 17:05:55
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4535
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:7357
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24499
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3677

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5880 PA4535_tr translation of PA4535 209 99.99 99.99 0 1091.0
164470 gb|AAG07923.1|AE004867_9 (AE004867) hypothetical protein PA4535 [Pseudomonas aeruginosa PAO1] 209 99.99 99.99 0 1091.0
164471 gb|AAN66253.1|AE016253_8 (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440] 209 74.64 85.16 0 839.0
164472 gb|AAO54454.1| (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 209 71.29 83.25 0 799.0
GC ORFID: 46679How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4535Glimmer Score:
Start: 4504625Stop: 4505254
Length: 630
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4535 translation of PA4535Homolog Bit Score 424.0
Other Homologs: psyr_15may02_Scaffold15_revised_gene2540 (ORF: BLASTX 313.0), t_PA4535 (ORF: GLIMMER)
GC ORF Sequence
ATGAACGAAGCGGATTATCTGCGCCTGCTCACCCGTCAGGCCGAACAAGCCAACGACTTCCTCTCCAACGCA
CGTAAATGGGACCGCGAGCGCTGGGTCTGCCAGCGCTTCCTCGAAGCCCTCAACGTGCCCTATCGCCAGGAG
GATTTCGCCGCCCCCGGGGAACAGCCGCCGGACGTCCTGTTCAAGGGTGCCGGCTTCGAGGTGTTCTTCGTC
CTCGATGAAGGTCGCCGGCTGAACGAGGAGTGGCGCGAGGAACTGACCCGTCGCCGCCAGGCCGTCAGCCTG
CGCCAACTGATCCGCCGCGAAGAGCGGCCACAACGGATCGCCGCCGCCGAGCTGCAGGCACGGCTGGCGCCA
ACCCTGCGCAAGAAGGCGCACAACTATAGCGAGCGCGGCATCGACCACGGCGAACTGGACCTGCTGGCCTTC
GTCAACCTGAaGcGCGCGGTGCCCGATTTCaatACGCCCTTCCCGCCGCCCACCGAATACCTGCGCCAAGGC
TGGCGCTCGCTGTCGATGGTCGGTCCGACCTTTGCCCGGGTGCTCTTCGCTCACTCCGGCGCCCCCGAGTTC
CTGCGCGCCAACCTCGGCCGCAGCATCCTGTTCGACGCCGGGGTAGGCCTGTGA