ViewGene

Locus Name:
GeneID:
Location:

GeneID:3676
TrivialName: PA14_22830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22830
PAO1 Ortholog Locus:PA3199
Sequence Length:630
Protein Length:209
Start: 1981908
Stop: 1982537
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06587.1|AE004744_2 (AE004744) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 209/209 (100%), Positives = 209/209 (100%)
Sequence:
ATGAGCCAGTTCTTCCAGATCCATCCGGAAAATCCCCAGCCACGGCTGGTCAAGCAGGCGGTGGAAATCGTC
CGCCAGGGTGGGGTGATCGTCTATCCCACCGACTCGTCCTATGCCCTGGGCTGCCGCATCGGCGAAAAGACC
GCGGTGGATCGCATCCGCCGCATCCGCCAACTGGACGACAAGCACAACTTCACCCTGGTCTGCCGCGACCTT
TCCGAGCTGGGGGTCTATGCCAAGGTCGACACCGGCCTGTTCCGCCTGCTCAAGGCGCACACCCCCGGTCCC
TACACCTTCATCCTCAGCGCCACCCGCGAGGTGCCGCGCATGCTCCTGCACCCCAAGCGCCGCACCATCGGC
CTGCGCGTGCCGAACTGTCCGATCGCCCGGGCGCTGCTGGAGGAGCTAGGCGAACCGCTGATGAGCGTGAGC
CTGATCATGCCCGGCAGCGGCGAGCCACTGAACGATCCCTATGAAATGCGCCAGGTACTGGAACACCAGGTC
GACCTGATCGTGGACGGGGGCTATGGCGGCGGCGAGGCCTCCACCGTGATCAGCCTGACCGACACCGATCCC
GAAGTGATCCGCGTGGGTTGCGGCGATCCGGCGCCGTTCATGCAGCCGGCCTGA
Translation:
MSQFFQIHPENPQPRLVKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDL
SELGVYAKVDTGLFRLLKAHTPGPYTFILSATREVPRMLLHPKRRTIGLRVPNCPIARALLEELGEPLMSVS
LIMPGSGEPLNDPYEMRQVLEHQVDLIVDGGYGGGEASTVISLTDTDPEVIRVGCGDPAPFMQPA*
AnnotationID:3684GeneID:3676
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 07:07:55
Gene Name:
Confidence Code:3
GeneProduct:putative SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
Cell Localization:()
Synonyms:yciO
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:putative translation factor
Functional Category Confidence Code:5
COGs:pfam01300,COG0009
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55331.1| (AE016862) Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 209

 Score =  344 bits (883), Expect = 2e-94
 Identities = 158/205 (77%), Positives = 190/205 (92%)

>gb|AAN70073.1|AE016647_3 (AE016790) Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida
           KT2440]
          Length = 221

 Score =  318 bits (815), Expect = 1e-86
 Identities = 147/206 (71%), Positives = 180/206 (87%)

>dbj|BAC60216.1| (AP005079) putative translation factor [Vibrio parahaemolyticus]
          Length = 206

 Score =  276 bits (705), Expect = 8e-74
 Identities = 130/205 (63%), Positives = 165/205 (80%)
Structural Features:
pfam01300, Sua5_yciO_yrdC, yrdC domain. 
CD-Length = 178 residues,  98.9% aligned
Score =  154 bits (391), Expect = 6e-39
Identities = 71/177 (40%), Positives = 102/177 (57%), Gaps = 2/177 (1%)

COG0009, SUA5, Putative translation factor (SUA5) 
[Translation, ribosomal structure and biogenesis]
CD-Length = 211 residues,  97.6% aligned
Score =  222 bits (566), Expect = 3e-59
Identities = 93/207 (44%), Positives = 119/207 (57%), Gaps = 2/207 (0%)
Genomic Context:
Comment:
ReferenceID:7355
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24497
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32344
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3676_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3676

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5879 PA3199_tr translation of PA3199 209 99.99 99.99 0 1090.0
164431 gb|AAG06587.1|AE004744_2 (AE004744) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 209 99.99 99.99 0 1090.0
164432 gb|AAO55331.1| (AE016862) Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. tomato str. DC3000] 209 76.07 91.38 0 882.0
164433 gb|AAN70073.1|AE016647_3 (AE016790) Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440] 221 66.96 81.90 12 815.0
164439 emb|CAC91018.1| (AJ414151) conserved hypothetical protein [Yersinia pestis CO92] 209 63.15 77.99 3 687.0
GC ORFID: 46678How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3199Glimmer Score:
Start: 2972023Stop: 2971394
Length: 630
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3199 translation of PA3199Homolog Bit Score 424.0
Other Homologs: psyr_15may02_Scaffold12_revised_gene2043 (ORF: BLASTX 345.0), t_PA3199 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCAGTTCTTCCAGATCCATCCGGAAAATCCCCAGCCACGGCTGGTCAAGCAGGCGGTGGAAATCGTC
CGCCAGGGTGGGGTGATCGTCTATCCCACCGACTCGTCCTATGCCCTGGGCTGCCGCATCGGCGAAAAGACC
GCGGTGGATCGCATCCGCCGCATCCGCCAACTGGACGACAAGCACAACTTCACCCTGGTCTGCCGCGACCTT
TCCGAGCTGGGGGTCTATGCCAAGGTCGACACCGGCCTGTTCCGCCTGCTCAAGGCGCACACCCCCGGTCCC
TACACCTTCATCCTCAGCGCCACCCGCGAGGTGCCGCGCATGCTCCTGCACCCCAAGCGCCGCACCATCGGC
CTGCGCGTGCCGAACTGTCCGATCGCCCGGGCGCTGCTGGAGGAGCTAGGCGAACCGCTGATGAGCGTGAGC
CTGATCATGCCCGGCAGCGGCGAGCCACTGAACGATCCCTATGAAATGCGCCAGGTACTGGAACACCAGGTC
GACCTGATCGTGGACGGGGGCTATGGCGGCGGCGAGGCCTCCACCGTGATCAGCCTGACCGACACCGATCCC
GAAGTGATCCGCGTGGGTTGCGGCGATCCGGCGCCGTTCATGCAGCCGGCCTGA