ViewGene
Locus Name:
GeneID:
Location:

GeneID:3675
TrivialName: PA14_25220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25220
PAO1 Ortholog Locus:PA3003
Sequence Length:630
Protein Length:209
Start: 2205012
Stop: 2204383
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06391.1|AE004725_4 (AE004725) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 209/209 (100%), Positives = 209/209 (100%)
Sequence:
ATGCGCTTGTTCCGTTGCCTTGCCCTGCTGCTCTCACTGGCCGCCCCCGCGGCATTCGCCGGCGGTCCCTAC
CAGGTGGAACTGGTGGTGTTCCGCCAGGCCGGCGATGCCGTGCCGTCCAGCCAGCCGGCGCCGGACGACTGG
GCCACCGGCGCACAGCCGCTGGCCAGCGACGCCCTGCGCGCCACCGCGCTCGACAACCAGCTCGCCAAGCTC
AGCCAGGACAACGGCTACACCGTGCTGCTGCACAAGGCCTGGCGCCAGGACATCGGCGAGACCCCGGTGAAG
ATCGCCCTCAGCGAAGGCCAGGAACAGGATCATCATTTCCCGGTGGAAGGTACGCTGACCCTCAGCCAGGTG
CGCTTCGTCGACATGGAGGCCGATTTCTGGGTCAATCGCTTCGGCGACGACGGTTTCCTCGCCGGCAGCCAG
CACATCAGGCAGGGCACGCGGCTGAAGAATGGCGAACTGACCTATCTCGACCATCCGAGCCTGGGCATCCTG
ATCAAGGTGGTGCCGGTCGGCGCCCGTCCCGCCGCCCCCAATCCCATGGAAATGGAAGAACAGCAGGCACCG
GCGGACGCGCCTCCCGTCGAAGGCGGTTTCGACGCCGCACCTCCTGCGCAATAG
Translation:
MRLFRCLALLLSLAAPAAFAGGPYQVELVVFRQAGDAVPSSQPAPDDWATGAQPLASDALRATALDNQLAKL
SQDNGYTVLLHKAWRQDIGETPVKIALSEGQEQDHHFPVEGTLTLSQVRFVDMEADFWVNRFGDDGFLAGSQ
HIRQGTRLKNGELTYLDHPSLGILIKVVPVGARPAAPNPMEMEEQQAPADAPPVEGGFDAAPPAQ*
AnnotationID:3683GeneID:3675
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 17:05:17
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3003
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7353




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24495




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3675
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5878
                           PA3003_tr
                           translation of PA3003
                           209
                           99.99
                           99.99
                           0
                           1090.0
     

     
     
164428
                           gb|AAG06391.1|AE004725_4
                           (AE004725) hypothetical protein PA3003 [Pseudomonas aeruginosa PAO1]
                           209
                           99.99
                           99.99
                           0
                           1090.0
     

     
     
164429
                           gb|AAN67760.1|AE016407_4
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           214
                           42.99
                           60.28
                           29
                           440.0
     

     
     
164430
                           gb|AAO55618.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           209
                           39.71
                           56.45
                           35
                           429.0
     

     






      

          
GC ORFID: 46677How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3003Glimmer Score: 

          
Start: 2748914Stop: 2749543

          
Length: 630


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3003 translation of PA3003Homolog Bit Score 424.0

          
Other Homologs:  t_PA3003 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCTTGTTCCGTTGCCTTGCCCTGCTGCTCTCACTGGCCGCCCCCGCGGCATTCGCCGGCGGTCCCTAC 
CAGGTGGAACTGGTGGTGTTCCGCCAGGCCGGCGATGCCGTGCCGTCCAGCCAGCCGGCGCCGGACGACTGG 
GCCACCGGCGCACAGCCGCTGGCCAGCGACGCCCTGCGCGCCACCGCGCTCGACAACCAGCTCGCCAAGCTC 
AGCCAGGACAACGGCTACACCGTGCTGCTGCACAAGGCCTGGCGCCAGGACATCGGCGAGACCCCGGTGAAG 
ATCGCCCTCAGCGAAGGCCAGGAACAGGATCATCATTTCCCGGTGGAAGGTACGCTGACCCTCAGCCAGGTG 
CGCTTCGTCGACATGGAGGCCGATTTCTGGGTCAATCGCTTCGGCGACGACGGTTTCCTCGCCGGCAGCCAG 
CACATCAGGCAGGGCACGCGGCTGAAGAATGGCGAACTGACCTATCTCGACCATCCGAGCCTGGGCATCCTG 
ATCAAGGTGGTGCCGGTCGGCGCCCGTCCCGCCGCCCCCAATCCCATGGAAATGGAAGAACAGCAGGCACCG 
GCGGACGCGCCTCCCGTCGAAGGCGGTTTCGACGCCGCACCTCCTGCGCAATAG