ViewGene
Locus Name:
GeneID:
Location:

GeneID:3674
TrivialName: PA14_26870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26870
PAO1 Ortholog Locus:PA2878
Sequence Length:642
Protein Length:213
Start: 2338141
Stop: 2337500
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06266.1|AE004714_3 (AE004714) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 207/213 (97%), Positives = 208/213 (97%)
Sequence:
ATGCCACCCACGTTTATCCAAAGAACCCGGACCAATAGCCTGGAGTCCCTACTCTACTTCCTGGATCCGCAG
ATGCCCCATGCAGCGCTTTTGCCTTCTCCCAGCGCGTCCCCGCTGCCGGAAGTGGTCGGTTTCTGGCGCGAT
GCCGGCCCTACCCTCTGGTTCGCCAGGAACGCCGATTTCGACCGGCGCTTCCGCGAGCGCTTCGCCCATCTC
TACGAGCTTGCCTGCGCCAACGCGCTGCGCCCGGCTGCCGGTGAAGCCGAGGACCATCTCGGCCTGCTGTTG
CTGCTCGACCAGTACCCGCGCAACGCCTTCCGCGGCACCCCGCGCATGTACGCCAGCGACGCCCGAGCGCGG
CGCTGGGCGGAGCGGGCACTGGGACAAGGCCTCGACCGCCAGGTCGAGGACGCGCTGCGGCTGTTCTTCTAC
CTGCCGTTCGCCCATGCCGAGAACCTTGCCGACCAGGATCGCTCGGTAGCGCTGAACCACGGACTCGGCCAG
CCCTTCCTCGCCCACGCTCGTGAGCATCGCGAGATCATCCGCCGCTTCGGGCGCTTTCCCCATCGCAATCCG
ATCCTCGGTCGCCCGTCCAGCGCCGAGGAACTCGCCTTCCTCGCCGCCGGCGGCTTCGCCGGCTGA
Translation:
MPPTFIQRTRTNSLESLLYFLDPQMPHAALLPSPSASPLPEVVGFWRDAGPTLWFARNADFDRRFRERFAHL
YELACANALRPAAGEAEDHLGLLLLLDQYPRNAFRGTPRMYASDARARRWAERALGQGLDRQVEDALRLFFY
LPFAHAENLADQDRSVALNHGLGQPFLAHAREHREIIRRFGRFPHRNPILGRPSSAEELAFLAAGGFAG*
AnnotationID:3682GeneID:3674
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 07:07:19
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2878
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7351




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24493




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3674_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3674
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5876
                           PA2878_tr
                           translation of PA2878
                           213
                           97.18
                           97.65
                           0
                           1089.0
     

     
     
164407
                           gb|AAG06266.1|AE004714_3
                           (AE004714) hypothetical protein PA2878 [Pseudomonas aeruginosa PAO1]
                           213
                           97.18
                           97.65
                           0
                           1089.0
     

     
     
164408
                           emb|CAC46289.1|
                           (AL591788) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
                           236
                           43.64
                           53.81
                           38
                           477.0
     

     
     
164410
                           dbj|BAB48301.1|
                           (AP002995) hypothetical protein [Mesorhizobium loti]
                           213
                           43.19
                           55.39
                           32
                           443.0
     

     
     
164409
                           gb|AAK65545.1|
                           (AE007275) hypothetical protein [Sinorhizobium meliloti]
                           239
                           43.09
                           53.13
                           46
                           474.0
     

     






      

          
GC ORFID: 46676How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2878Glimmer Score: 

          
Start: 2615785Stop: 2616426

          
Length: 642


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2878 translation of PA2878Homolog Bit Score 424.0

          
Other Homologs:  t_PA5109 (ORF: BLASTX 130.0), t_PA2878 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCACCCACGTTTATCCAAAGAACCCGGACCAATAGCCTGGAGTCCCTACTCTACTTCCTGGATCCGCAG 
ATGCCCCATGCAGCGCTTTTGCCTTCTCCCAGCGCGTCCCCGCTGCCGGAAGTGGTCGGTTTCTGGCGCGAT 
GCCGGCCCTACCCTCTGGTTCGCCAGGAACGCCGATTTCGACCGGCGCTTCCGCGAGCGCTTCGCCCATCTC 
TACGAGCTTGCCTGCGCCAACGCGCTGCGCCCGGCTGCCGGTGAAGCCGAGGACCATCTCGGCCTGCTGTTG 
CTGCTCGACCAGTACCCGCGCAACGCCTTCCGCGGCACCCCGCGCATGTACGCCAGCGACGCCCGAGCGCGG 
CGCTGGGCGGAGCGGGCACTGGGACAAGGCCTCGACCGCCAGGTCGAGGACGCGCTGCGGCTGTTCTTCTAC 
CTGCCGTTCGCCCATGCCGAGAACCTTGCCGACCAGGATCGCTCGGTAGCGCTGAACCACGGACTCGGCCAG 
CCCTTCCTCGCCCACGCTCGTGAGCATCGCGAGATCATCCGCCGCTTCGGGCGCTTTCCCCATCGCAATCCG 
ATCCTCGGTCGCCCGTCCAGCGCCGAGGAACTCGCCTTCCTCGCCGCCGGCGGCTTCGCCGGCTGA