ViewGene
Locus Name:
GeneID:
Location:

GeneID:3673
TrivialName: PA14_35040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35040
PAO1 Ortholog Locus:PA2284
Sequence Length:672
Protein Length:223
Start: 3120437
Stop: 3119766
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05672.1|AE004654_3 (AE004654) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 215/222 (96%), Positives = 218/222 (98%)
Sequence:
ATGATCCCGCCGGGCGCGCAAGCACCCTGCCCCGCCGGGGCAAGGGACGACGAAGCCACGCGGTTGCGGCGC
TTCGTCGCCAGCGTTCCCAACCGGATAAGCATCGGCGCCGCCCGTGGCGCGGCGCCGCTGTCCGCCCTGCTC
GGCCTGCTGCTGCTTGGCGGCGCCTGGACCTTGCGCGACCACCCCGGTCCCGGGCATGAGGCGGCGGCGCTG
TGCCTGCTGGCGGCGGCCGCCCTCCTCATGTGCCTGGCCTGCCTGCAGCGCAACGCCAGGAACGCGCCGTTC
CTCGTCCTCGGCCAGGGGCGCCTGCGCGCCCGCAGCCTGTCGGCGCCGCTGGACCTGCTGGAGGTCGCCGAC
CTGCGCCTGGAGGACGGGGTCTGGTTCTCCGCGATAGTCCTCGAACTGCACGGCAAGGCACTACCGGCGCCA
TCCACGCGCCCGCTCGACCCGTTCGCCGCGCGTGCCGTCAGCGAATGCCGGGACGGCCCACAGGTTCGCCTG
CTGTCCCCCGGCTGGCGCCTCAACGGTCGCAACCTGTCACTACTGGAAGCCGCGGAGGTCATCGACCTCTAC
CTGGACATCGCCCACGCCCAGGCCCGGCTCCGCCAACTGGGCGAGATCCCGCCCAGTGCTTCCTCTTCACTC
CCAACTCCAAGGATATTTTCATGA
Translation:
MIPPGAQAPCPAGARDDEATRLRRFVASVPNRISIGAARGAAPLSALLGLLLLGGAWTLRDHPGPGHEAAAL
CLLAAAALLMCLACLQRNARNAPFLVLGQGRLRARSLSAPLDLLEVADLRLEDGVWFSAIVLELHGKALPAP
STRPLDPFAARAVSECRDGPQVRLLSPGWRLNGRNLSLLEAAEVIDLYLDIAHAQARLRQLGEIPPSASSSL
PTPRIFS*
AnnotationID:3681GeneID:3673
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 11:11:07
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2284
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7349




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24491




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3673
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
164406
                           gb|AAG05672.1|AE004654_3
                           (AE004654) hypothetical protein PA2284 [Pseudomonas aeruginosa PAO1]
                           223
                           96.41
                           97.75
                           0
                           1094.0
     

     
     
5875
                           PA2284_tr
                           translation of PA2284
                           223
                           95.96
                           97.75
                           0
                           1090.0
     

     






      

          
GC ORFID: 46675How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2284Glimmer Score: 

          
Start: 1833479Stop: 1834150

          
Length: 672


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2284 translation of PA2284Homolog Bit Score 424.0

          
Other Homologs:  t_PA2284 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCCGCCGGGCGCGCAAGCACCCTGCCCCGCCGGGGCAAGGGACGACGAAGCCACGCGGTTGCGGCGC 
TTCGTCGCCAGCGTTCCCAACCGGATAAGCATCGGCGCCGCCCGTGGCGCGGCGCCGCTGTCCGCCCTGCTC 
GGCCTGCTGCTGCTTGGCGGCGCCTGGACCTTGCGCGACCACCCCGGTCCCGGGCATGAGGCGGCGGCGCTG 
TGCCTGCTGGCGGCGGCCGCCCTCCTCATGTGCCTGGCCTGCCTGCAGCGCAACGCCAGGAACGCGCCGTTC 
CTCGTCCTCGGCCAGGGGCGCCTGCGCGCCCGCAGCCTGTCGGCGCCGCTGGACCTGCTGGAGGTCGCCGAC 
CTGCGCCTGGAGGACGGGGTCTGGTTCTCCGCGATAGTCCTCGAACTGCACGGCAAGGCACTACCGGCGCCA 
TCCACGCGCCCGCTCGACCCGTTCGCCGCGCGTGCCGTCAGCGAATGCCGGGACGGCCCACAGGTTCGCCTG 
CTGTCCCCCGGCTGGCGCCTCAACGGTCGCAACCTGTCACTACTGGAAGCCGCGGAGGTCATCGACCTCTAC 
CTGGACATCGCCCACGCCCAGGCCCGGCTCCGCCAACTGGGCGAGATCCCGCCCAGTGCTTCCTCTTCACTC 
CCAACTCCAAGGATATTTTCATGA