ViewGene
Locus Name:
GeneID:
Location:

GeneID:3672
TrivialName: PA14_37080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37080
PAO1 Ortholog Locus:PA2126
Sequence Length:636
Protein Length:211
Start: 3303409
Stop: 3304044
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05514.1|AE004640_3 (AE004640) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 211/211 (100%), Positives = 211/211 (100%)
Sequence:
ATGGCACAGACAAAGACACTGACGGAGCGAGCCGAGGCGCTGTTCGGCGAACTGCACGGGTTGCCGCTTGCC
GAGCGGATTGAAGCCATCAACCGGATCCGCCGGCTGCTCCACGCGCACAGTCCGTTCGCCGAAGAGCCGGTC
GATTGCGTGCAGTGGGTGCGTGCCGAGCGCGTCGCCGGCAACGACTACAACCCCAATACCGTCGCGCCGCCG
GAGATGCGACTGCTGAGGCTGTCCATCGAGTCCGACGGATTCACCCAGCCCATCGTCGCCTATCCGCAGGCC
GACGGGCGCTACGAGGTGGTCGACGGCTTCCACCGCCTGCGCGTGGGCAGCGCCAAGGGCGCGCTGCGCCAG
CGTCTGCACGGCTACCTGCCGATCGCCGCGATACGCGCCGGGCGCGAAGGCGACAGCGAGCGCATCGCCGCC
ACCATCCGCCACAACCGCGCACGCGGCGTGCACGGCGTGTTGCCGATGACGGCGATCGTGGTGACCCTGCTC
AAGGCCGGCTGGAGCGAGGCCGACGTGGCCCGCGAACTGGGCATGGACAATGACGAGGTGCTGCGTTTCAAG
CAGGTTTCCGGATTGCCCGAGCTGTTCCGCGAACACGTGTATTCCCGCTCCTGGGAGTAG
Translation:
MAQTKTLTERAEALFGELHGLPLAERIEAINRIRRLLHAHSPFAEEPVDCVQWVRAERVAGNDYNPNTVAPP
EMRLLRLSIESDGFTQPIVAYPQADGRYEVVDGFHRLRVGSAKGALRQRLHGYLPIAAIRAGREGDSERIAA
TIRHNRARGVHGVLPMTAIVVTLLKAGWSEADVARELGMDNDEVLRFKQVSGLPELFREHVYSRSWE*
AnnotationID:3680GeneID:3672
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 09:09:53
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2126
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1475
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL19555.1| (AE008724) putative transcriptional regulator [Salmonella
           typhimurium LT2]
          Length = 205

 Score =  212 bits (539), Expect = 1e-54
 Identities = 107/193 (55%), Positives = 131/193 (67%), Gaps = 3/193 (1%)








 
Structural Features:
COG1475, Spo0J, Predicted transcriptional regulators [Transcription]
CD-Length = 240 residues,  87.9% aligned
Score =  100 bits (250), Expect = 1e-22






   
Genomic Context:






   
Comment:


















    ReferenceID:7347




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24489




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32597




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3672_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3672
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5874
                           PA2126_tr
                           translation of PA2126
                           211
                           99.99
                           99.99
                           0
                           1089.0
     

     
     
164373
                           gb|AAG05514.1|AE004640_3
                           (AE004640) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           211
                           99.99
                           99.99
                           0
                           1089.0
     

     
     
164374
                           emb|CAD18768.1|
                           (AL646086) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           211
                           64.92
                           78.67
                           2
                           725.0
     

     
     
164375
                           gb|AAO69866.1|
                           (AE016841) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           213
                           52.11
                           64.78
                           10
                           549.0
     

     
     
164376
                           emb|CAD05080.1|
                           (AL627267) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
                           213
                           52.11
                           64.78
                           10
                           549.0
     

     






      

          
GC ORFID: 46674How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2126Glimmer Score: 

          
Start: 1650505Stop: 1649870

          
Length: 636


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2126 translation of PA2126Homolog Bit Score 424.0

          
Other Homologs:  t_PA2126 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCACAGACAAAGACACTGACGGAGCGAGCCGAGGCGCTGTTCGGCGAACTGCACGGGTTGCCGCTTGCC 
GAGCGGATTGAAGCCATCAACCGGATCCGCCGGCTGCTCCACGCGCACAGTCCGTTCGCCGAAGAGCCGGTC 
GATTGCGTGCAGTGGGTGCGTGCCGAGCGCGTCGCCGGCAACGACTACAACCCCAATACCGTCGCGCCGCCG 
GAGATGCGACTGCTGAGGCTGTCCATCGAGTCCGACGGATTCACCCAGCCCATCGTCGCCTATCCGCAGGCC 
GACGGGCGCTACGAGGTGGTCGACGGCTTCCACCGCCTGCGCGTGGGCAGCGCCAAGGGCGCGCTGCGCCAG 
CGTCTGCACGGCTACCTGCCGATCGCCGCGATACGCGCCGGGCGCGAAGGCGACAGCGAGCGCATCGCCGCC 
ACCATCCGCCACAACCGCGCACGCGGCGTGCACGGCGTGTTGCCGATGACGGCGATCGTGGTGACCCTGCTC 
AAGGCCGGCTGGAGCGAGGCCGACGTGGCCCGCGAACTGGGCATGGACAATGACGAGGTGCTGCGTTTCAAG 
CAGGTTTCCGGATTGCCCGAGCTGTTCCGCGAACACGTGTATTCCCGCTCCTGGGAGTAG