ViewGene
Locus Name:
GeneID:
Location:

GeneID:3671
TrivialName: PA14_38900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38900
PAO1 Ortholog Locus:PA1980
Sequence Length:678
Protein Length:225
Start: 3468316
Stop: 3467639
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05368.1|AE004624_7 (AE004624) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 223/225 (99%), Positives = 225/225 (100%)
Sequence:
ATGAAGATCCTGCTGGTGGACGATCATTTCGTGGTCCGCGAAGGGCTGGCCGCGCTGTTGCGCGGGCTGCTC
CCCGACGTGGAGGTGAGCGAGGCCGGCGATGGCGAAGAAGCCTTGCAGGCGGTGCAGCGGGAAATTCCTTCG
CTGGTCATCGTCGATCTCGGCCTGCCGGGCATCAGCGGCCTGGAACTGACTCGCCGGCTGCGCCAGCGCCTG
CCGCAGTTGCGTGTGCTGTTCTTCAGCCTCCACGACGAACTGGCCCTGGTGCGCCAGGCGCTGGATGCCGGT
GCCCGCGGCTACGTGACCAAGCGCGCGGCGCCGACGGTGCTGCTGGAGGCGATACGGCGAGTGCTCGCCGGC
CAGCTCTATCTGGAGCAGCCCCTGGCCACGCGCCTGGCCTGCCAGTCGTGGGAAGAGCAGGGCGGGGCAGCG
TTGCGCGGGCTGACCCGTCGCGAGTTCGAGATCTTCCGCCTGCTCGCGCGTGGCCTGGCCCTGCGCGAGGTG
GCCgAGCACCTGGGGGTAAGCGCCAAgAccgTGTCCAACCATGTCAGCCTGCTCAAGCAGAAGTTGCAGGTG
AGTACCCAGGCGGAACTGGTGCACCGGGCCATCGACAGCGGCGTGCTGCGGCTGGGCCTGCCGCTGCCGCTC
GCCGAGGAGGCTCGCGGCAGCCTCGGCTAG
Translation:
MKILLVDDHFVVREGLAALLRGLLPDVEVSEAGDGEEALQAVQREIPSLVIVDLGLPGISGLELTRRLRQRL
PQLRVLFFSLHDELALVRQALDAGARGYVTKRAAPTVLLEAIRRVLAGQLYLEQPLATRLACQSWEEQGGAA
LRGLTRREFEIFRLLARGLALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAELVHRAIDSGVLRLGLPLPL
AEEARGSLG*
AnnotationID:3679GeneID:3671
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 16:04:19
Gene Name:
Confidence Code:3
GeneProduct:putative wo-component response regulator
Cell Localization:()
Synonyms:exaE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative DNA-binding response regulator
Functional Category Confidence Code:5
COGs:COG2197
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68280.1|AE016462_6 (AE016784) DNA-binding response regulator, LuxR family [Pseudomonas
           putida KT2440]
          Length = 212

 Score =  270 bits (689), Expect = 6e-72
 Identities = 139/210 (66%), Positives = 169/210 (80%)

>gb|AAN66040.1|AE016233_6 (AE016775) DNA-binding response regulator UhpA [Pseudomonas putida
           KT2440]
          Length = 209

 Score =  146 bits (369), Expect = 8e-35
 Identities = 79/205 (38%), Positives = 130/205 (63%), Gaps = 2/205 (0%)






 
Structural Features:
COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH 
DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 211 residues, 100.0% aligned
Score =  176 bits (447), Expect = 2e-45
Identities = 93/211 (44%), Positives = 128/211 (60%), Gaps = 1/211 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7345




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24487




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32746




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3671_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3671
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5873
                           PA1980_tr
                           translation of PA1980
                           225
                           99.11
                           99.99
                           0
                           1091.0
     

     
     
164353
                           gb|AAG05368.1|AE004624_7
                           (AE004624) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           225
                           99.11
                           99.99
                           0
                           1091.0
     

     
     
164354
                           emb|CAB95008.1|
                           (AJ009858) response regulator [Pseudomonas aeruginosa]
                           225
                           99.11
                           99.99
                           0
                           1089.0
     

     
     
164355
                           gb|AAN68280.1|AE016462_6
                           (AE016784) DNA-binding response regulator, LuxR family [Pseudomonas putida KT2440]
                           226
                           61.94
                           75.22
                           15
                           685.0
     

     
     
164356
                           dbj|BAC50546.1|
                           (AP005954) two-component response regulator [Bradyrhizobium japonicum USDA 110]
                           236
                           40.67
                           53.38
                           27
                           375.0
     

     






      

          
GC ORFID: 46673How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1980Glimmer Score: 

          
Start: 1485595Stop: 1486272

          
Length: 678


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1980 translation of PA1980Homolog Bit Score 424.0

          
Other Homologs:  t_PA1980 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGATCCTGCTGGTGGACGATCATTTCGTGGTCCGCGAAGGGCTGGCCGCGCTGTTGCGCGGGCTGCTC 
CCCGACGTGGAGGTGAGCGAGGCCGGCGATGGCGAAGAAGCCTTGCAGGCGGTGCAGCGGGAAATTCCTTCG 
CTGGTCATCGTCGATCTCGGCCTGCCGGGCATCAGCGGCCTGGAACTGACTCGCCGGCTGCGCCAGCGCCTG 
CCGCAGTTGCGTGTGCTGTTCTTCAGCCTCCACGACGAACTGGCCCTGGTGCGCCAGGCGCTGGATGCCGGT 
GCCCGCGGCTACGTGACCAAGCGCGCGGCGCCGACGGTGCTGCTGGAGGCGATACGGCGAGTGCTCGCCGGC 
CAGCTCTATCTGGAGCAGCCCCTGGCCACGCGCCTGGCCTGCCAGTCGTGGGAAGAGCAGGGCGGGGCAGCG 
TTGCGCGGGCTGACCCGTCGCGAGTTCGAGATCTTCCGCCTGCTCGCGCGTGGCCTGGCCCTGCGCGAGGTG 
GCCgAGCACCTGGGGGTAAGCGCCAAgAccgTGTCCAACCATGTCAGCCTGCTCAAGCAGAAGTTGCAGGTG 
AGTACCCAGGCGGAACTGGTGCACCGGGCCATCGACAGCGGCGTGCTGCGGCTGGGCCTGCCGCTGCCGCTC 
GCCGAGGAGGCTCGCGGCAGCCTCGGCTAG