ViewGene
Locus Name:
GeneID:
Location:

GeneID:3670
TrivialName: PA14_38880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38880
PAO1 Ortholog Locus:PA1981
Sequence Length:648
Protein Length:215
Start: 3466965
Stop: 3467612
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05369.1|AE004624_8 (AE004624) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 214/215 (99%), Positives = 214/215 (99%)
Sequence:
ATGAAGACCTTCCTCCTCTGCGCCACCCTGCTCGGCGCCGGCCTGGCCCAGGCCGCCGACGACATCGACGAC
GTCCGCGTCATCGCCGGCTGCCGCCTGGAGCCCGGCGCGCGCTGCGCCAAGGCCGACTTGCGCGGCGCCGAC
CTGCGCAACCTCGACCTCGGCCGCATCGACCTGGCCGGCGCCGATCTCTCCGGCGCCGACCTGCGTCACGCC
AGGCTCGACCTGGCCAACCTGGAAAAAGCCAACCTGCGTGGTGCCGACCTCACCCGCGCCAGCCTGCAGCAA
GCCAACCTGCGCGGCGCCGACCTCTCCGGCGCCAGGGCGGTGGCGATCCAGGCCTGGGGCCTGTTCGCCCAG
GGCGCCCAGTGGCAAGGCGCCGACCTCACCGCCGCCTACCTGGAGTTCGCCCGTCTCAGCGGCGGCCGCCTG
CACCAGGCCACGCTGCGCGCCGCCGACCTGGAGATGACCTGGCTGTCCCGCGCCGATCTCAAGGGCGCCGAC
CTGCGCGACGCCAACCTGCAGGAAGTCAAGCTGGCCGAGGCCAACCTGGAAGATGCCGACCTGCGCGGCAGC
AAGGTGCGCTTCGGCAACTTCCAGGGCAGCAACATGCAGGGTTGCAAGGATTGCCCCGCGGGCTGGCAGTGA
Translation:
MKTFLLCATLLGAGLAQAADDIDDVRVIAGCRLEPGARCAKADLRGADLRNLDLGRIDLAGADLSGADLRHA
RLDLANLEKANLRGADLTRASLQQANLRGADLSGARAVAIQAWGLFAQGAQWQGADLTAAYLEFARLSGGRL
HQATLRAADLEMTWLSRADLKGADLRDANLQEVKLAEANLEDADLRGSKVRFGNFQGSNMQGCKDCPAGWQ*
AnnotationID:3678GeneID:3670
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 16:04:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1981
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7343




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24485




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32745




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3670_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3670
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5872
                           PA1981_tr
                           translation of PA1981
                           215
                           99.53
                           99.53
                           0
                           1091.0
     

     
     
164341
                           gb|AAG05369.1|AE004624_8
                           (AE004624) hypothetical protein PA1981 [Pseudomonas aeruginosa PAO1]
                           215
                           99.53
                           99.53
                           0
                           1091.0
     

     
     
164342
                           emb|CAA08897.1|
                           (AJ009858) hypothetical protein [Pseudomonas aeruginosa]
                           215
                           93.48
                           93.48
                           0
                           1018.0
     

     
     
164343
                           gb|AAN68281.1|AE016462_7
                           (AE016784) pentapeptide repeat family protein [Pseudomonas putida KT2440]
                           221
                           60.18
                           73.30
                           8
                           638.0
     

     
     
164345
                           gb|AAA69501.1|
                           (L42525) unknown [Plasmid pSW200]
                           311
                           27.97
                           36.01
                           112
                           290.0
     

     






      

          
GC ORFID: 46672How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1981Glimmer Score: 

          
Start: 1486946Stop: 1486299

          
Length: 648


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1981 translation of PA1981Homolog Bit Score 424.0

          
Other Homologs:  t_PA1981 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGACCTTCCTCCTCTGCGCCACCCTGCTCGGCGCCGGCCTGGCCCAGGCCGCCGACGACATCGACGAC 
GTCCGCGTCATCGCCGGCTGCCGCCTGGAGCCCGGCGCGCGCTGCGCCAAGGCCGACTTGCGCGGCGCCGAC 
CTGCGCAACCTCGACCTCGGCCGCATCGACCTGGCCGGCGCCGATCTCTCCGGCGCCGACCTGCGTCACGCC 
AGGCTCGACCTGGCCAACCTGGAAAAAGCCAACCTGCGTGGTGCCGACCTCACCCGCGCCAGCCTGCAGCAA 
GCCAACCTGCGCGGCGCCGACCTCTCCGGCGCCAGGGCGGTGGCGATCCAGGCCTGGGGCCTGTTCGCCCAG 
GGCGCCCAGTGGCAAGGCGCCGACCTCACCGCCGCCTACCTGGAGTTCGCCCGTCTCAGCGGCGGCCGCCTG 
CACCAGGCCACGCTGCGCGCCGCCGACCTGGAGATGACCTGGCTGTCCCGCGCCGATCTCAAGGGCGCCGAC 
CTGCGCGACGCCAACCTGCAGGAAGTCAAGCTGGCCGAGGCCAACCTGGAAGATGCCGACCTGCGCGGCAGC 
AAGGTGCGCTTCGGCAACTTCCAGGGCAGCAACATGCAGGGTTGCAAGGATTGCCCCGCGGGCTGGCAGTGA