ViewGene
Locus Name:
GeneID:
Location:

GeneID:367
TrivialName: PA14_13130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13130
PAO1 Ortholog Locus:PA3923
Sequence Length:1926
Protein Length:641
Start: 1126214
Stop: 1128139
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07310.1|AE004810_2 (AE004810) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 640/641 (99%), Positives = 641/641 (100%)
Sequence:
ATGACAACCCGTAATCCGTTCTCGCGTCGGGCCCGGTTGCCGTTGGCCGTCAGCCTGGCTTCCTCGCTGGCG
GCTCCGGCCTTTGGGGTGACCTTCAACATCGGGGAAATCGAAGGTTCCTTCGACTCGGCGTTGTCGGTCGGG
GCCAGCTGGTCGACCGCCAAGCCGAACAAGAACCTGATCGGTGTGAACAACGGCGGCAAGGGACTTTCCCAG
ACCTCCGACGACAGCCACTTGAACTTCAAGCGTGGGGAAACGTTCTCGAAGGTCTTCAAGGGCATCCATGAC
CTCGAGCTGAAGTACGGCGATACCGGTGTGTTCCTGCGCGGCAAGTACTGGTACGACTTCGAACTGAAGGAC
GAGCACCGCGAGTTCAAGGACATCGACGACAGCGGCCGCAAGACCCTGGCCAAGTCCTCCGGCGCCGAACTG
CTCGACGCCTTCATCTACCACAACTATGCCATCGGTGACCTGCCGGGCAGCGTGCGCCTGGGCAAGCAGGTG
GTGAACTGGGGCGAGAGCACCTTCATCCAGAACGGCATCAGCGCCATCAACCCGATCGACGTCACCGCCTTC
CGCCGGCCCGGCTCGGAGATCAAGGAAGGCCTGATCCCGGTGAACATGTTCTACCTGTCGCAGAACCTCACC
GACAACCTGTCCGCCGAAGGCTTCTACCAGATCGAGTGGGACCAGACGGTGGTCGACAACTGCGGCACCTTC
TTCTCCCAGCCGGACGTGGTGGCCGATGGCTGCGACCAGAACCTGGCGGTGCTGACCAACAACAAGGCGTCC
ATCAACCTGCTCAACAACGTGCTCGCCGGGGCTGGCCTGAGCGTTACCCCGTCGCCCTGGGACGAGGGCATC
CTGGTCCGCCGCGGGCCGGACCGCGACGCTCGCGACAGCGGCCAGTACGGCTTCGCCCTGCGCTACTTCGCC
GACGAACTGAACACCGAGTTCGGCGCCTACTACATGAACTACCACAGCCGCCTGCCGATCTTCAGCGGCCAG
GGCGCCTCGGCCAGCACCATGGCGGCGATCAACGACCTCGCCACCCGCCTCGCCGCGATCAACCCGGCACTG
GCCGCCCAGGCCGCGGCGGCGGCCACCGCCGGCAACTCCAGCTACTTCATCGAGTACCCGGAAGATATCCGC
ATGTTCGGCCTGAGCTTCTCCACCACGTTGCCCAACGGCACCGCGTGGAGCGGCGAAGTCAGCTACCGGCCC
AACGCGCCGGTGCAGCTGAACACCACCGACATCCTCTTCGCCGGCCTCGACCCGGTGAGCATCGGCGGCAAC
CGCCCCTACGACAACGCCTCGGTGCTGAACGGCCAGGCCGGGCAGGACCTGCACGGCTATCGGCGCAAGGAG
ATCACCCAACTGCAGACCACCCTGACGCACTTCTTCGACCAGGTGATGGGCGCCGAGCGCCTGACCCTGGTG
GGCGAGATCGGCTGGACCCACGTCGGCGGCCTGGAAAGCACCTCCAAGGCACGCTACGGGCGTGACCCGGTC
TTCGGACCGGGGCCGCTGCCGGGGACCATCTCCGGCCTGGCCAGCTGCCAGGCGCTGAACATCAGCACGCTG
GGCACCGCCGAAGCGAACAACGTCAGCCGCTACTGCGAGAACGATGGCTATACCACCTCGGACGCATGGGGT
TATCGCGCCCGTGCGATCTGGGACTACAACGACGTGTTCATGGGCGTGAACCTCAAGCCCAGTGTGGCCTGG
TCGCACGACGTCGATGGCTATTCGCCCGGCCCCGGCGCCAACTTCGAGGAAGGCCGCAAGGCGGTCAGCCTG
GGGGTGGACGCGGAGTACCAGAACACCTACACCGCGAGCCTCTCCTACACCAACTTCTTCGACGGCAAGTAC
ACCACCGTGGACGATCGCGACTTCGTCGCGCTCAGCTTCGGCATGAACTTCTGA
Translation:
MTTRNPFSRRARLPLAVSLASSLAAPAFGVTFNIGEIEGSFDSALSVGASWSTAKPNKNLIGVNNGGKGLSQ
TSDDSHLNFKRGETFSKVFKGIHDLELKYGDTGVFLRGKYWYDFELKDEHREFKDIDDSGRKTLAKSSGAEL
LDAFIYHNYAIGDLPGSVRLGKQVVNWGESTFIQNGISAINPIDVTAFRRPGSEIKEGLIPVNMFYLSQNLT
DNLSAEGFYQIEWDQTVVDNCGTFFSQPDVVADGCDQNLAVLTNNKASINLLNNVLAGAGLSVTPSPWDEGI
LVRRGPDRDARDSGQYGFALRYFADELNTEFGAYYMNYHSRLPIFSGQGASASTMAAINDLATRLAAINPAL
AAQAAAAATAGNSSYFIEYPEDIRMFGLSFSTTLPNGTAWSGEVSYRPNAPVQLNTTDILFAGLDPVSIGGN
RPYDNASVLNGQAGQDLHGYRRKEITQLQTTLTHFFDQVMGAERLTLVGEIGWTHVGGLESTSKARYGRDPV
FGPGPLPGTISGLASCQALNISTLGTAEANNVSRYCENDGYTTSDAWGYRARAIWDYNDVFMGVNLKPSVAW
SHDVDGYSPGPGANFEEGRKAVSLGVDAEYQNTYTASLSYTNFFDGKYTTVDDRDFVALSFGMNF*
AnnotationID:376GeneID:367
AnnotatorUID: urbach
Modification Date/Time: 2004-03-21 17:05:51
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06980.1
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAG06470.1|AE004732_4 (AE004732) glycine betaine
transmethylase [Pseudomonas aeruginosa PAO1] Length = 654
Score =  293 bits (751), Expect = 2e-78
 Identities = 218/664 (32%), Positives = 314/664 (47%), Gaps = 88/664 (13%)






 
Structural Features:
pfam06980.1, DUF1302






   
Genomic Context:






   
Comment:


















    ReferenceID:737




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17879




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:367
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
612
                           PA3923_tr
                           translation of PA3923
                           641
                           99.84
                           99.99
                           0
                           3368.0
     

     
     
28948
                           gb|AAG07310.1|AE004810_2
                           (AE004810) hypothetical protein PA3923 [Pseudomonas aeruginosa PAO1]
                           641
                           99.84
                           99.99
                           0
                           3368.0
     

     
     
28950
                           gb|AAN66390.1|AE016266_12
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           645
                           74.41
                           83.72
                           21
                           2540.0
     

     
     
28949
                           gb|AAO54678.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           665
                           72.63
                           82.10
                           44
                           2553.0
     

     
     
613
                           PA3422_tr
                           translation of PA3422
                           648
                           55.70
                           69.75
                           70
                           1803.0
     

     






      

          
GC ORFID: 43369How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3923Glimmer Score: 

          
Start: 3827724Stop: 3825799

          
Length: 1926


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3923 translation of PA3923Homolog Bit Score 1301.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4327 (ORF: BLASTX 979.0), t_PA3422 (ORF: BLASTX 677.0), t_PA3923 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAACCCGTAATCCGTTCTCGCGTCGGGCCCGGTTGCCGTTGGCCGTCAGCCTGGCTTCCTCGCTGGCG 
GCTCCGGCCTTTGGGGTGACCTTCAACATCGGGGAAATCGAAGGTTCCTTCGACTCGGCGTTGTCGGTCGGG 
GCCAGCTGGTCGACCGCCAAGCCGAACAAGAACCTGATCGGTGTGAACAACGGCGGCAAGGGACTTTCCCAG 
ACCTCCGACGACAGCCACTTGAACTTCAAGCGTGGGGAAACGTTCTCGAAGGTCTTCAAGGGCATCCATGAC 
CTCGAGCTGAAGTACGGCGATACCGGTGTGTTCCTGCGCGGCAAGTACTGGTACGACTTCGAACTGAAGGAC 
GAGCACCGCGAGTTCAAGGACATCGACGACAGCGGCCGCAAGACCCTGGCCAAGTCCTCCGGCGCCGAACTG 
CTCGACGCCTTCATCTACCACAACTATGCCATCGGTGACCTGCCGGGCAGCGTGCGCCTGGGCAAGCAGGTG 
GTGAACTGGGGCGAGAGCACCTTCATCCAGAACGGCATCAGCGCCATCAACCCGATCGACGTCACCGCCTTC 
CGCCGGCCCGGCTCGGAGATCAAGGAAGGCCTGATCCCGGTGAACATGTTCTACCTGTCGCAGAACCTCACC 
GACAACCTGTCCGCCGAAGGCTTCTACCAGATCGAGTGGGACCAGACGGTGGTCGACAACTGCGGCACCTTC 
TTCTCCCAGCCGGACGTGGTGGCCGATGGCTGCGACCAGAACCTGGCGGTGCTGACCAACAACAAGGCGTCC 
ATCAACCTGCTCAACAACGTGCTCGCCGGGGCTGGCCTGAGCGTTACCCCGTCGCCCTGGGACGAGGGCATC 
CTGGTCCGCCGCGGGCCGGACCGCGACGCTCGCGACAGCGGCCAGTACGGCTTCGCCCTGCGCTACTTCGCC 
GACGAACTGAACACCGAGTTCGGCGCCTACTACATGAACTACCACAGCCGCCTGCCGATCTTCAGCGGCCAG 
GGCGCCTCGGCCAGCACCATGGCGGCGATCAACGACCTCGCCACCCGCCTCGCCGCGATCAACCCGGCACTG 
GCCGCCCAGGCCGCGGCGGCGGCCACCGCCGGCAACTCCAGCTACTTCATCGAGTACCCGGAAGATATCCGC 
ATGTTCGGCCTGAGCTTCTCCACCACGTTGCCCAACGGCACCGCGTGGAGCGGCGAAGTCAGCTACCGGCCC 
AACGCGCCGGTGCAGCTGAACACCACCGACATCCTCTTCGCCGGCCTCGACCCGGTGAGCATCGGCGGCAAC 
CGCCCCTACGACAACGCCTCGGTGCTGAACGGCCAGGCCGGGCAGGACCTGCACGGCTATCGGCGCAAGGAG 
ATCACCCAACTGCAGACCACCCTGACGCACTTCTTCGACCAGGTGATGGGCGCCGAGCGCCTGACCCTGGTG 
GGCGAGATCGGCTGGACCCACGTCGGCGGCCTGGAAAGCACCTCCAAGGCACGCTACGGGCGTGACCCGGTC 
TTCGGACCGGGGCCGCTGCCGGGGACCATCTCCGGCCTGGCCAGCTGCCAGGCGCTGAACATCAGCACGCTG 
GGCACCGCCGAAGCGAACAACGTCAGCCGCTACTGCGAGAACGATGGCTATACCACCTCGGACGCATGGGGT 
TATCGCGCCCGTGCGATCTGGGACTACAACGACGTGTTCATGGGCGTGAACCTCAAGCCCAGTGTGGCCTGG 
TCGCACGACGTCGATGGCTATTCGCCCGGCCCCGGCGCCAACTTCGAGGAAGGCCGCAAGGCGGTCAGCCTG 
GGGGTGGACGCGGAGTACCAGAACACCTACACCGCGAGCCTCTCCTACACCAACTTCTTCGACGGCAAGTAC 
ACCACCGTGGACGATCGCGACTTCGTCGCGCTCAGCTTCGGCATGAACTTCTGA