ViewGene

Locus Name:
GeneID:
Location:

GeneID:3669
TrivialName: PA14_40930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40930
PAO1 Ortholog Locus:PA1825
Sequence Length:645
Protein Length:214
Start: 3650289
Stop: 3649645
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05214.1|AE004609_1 (AE004609) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 212/214 (99%), Positives = 212/214 (99%)
Sequence:
ATGCAGTACGACGGTCTGGCCTGGGCATTCGCGTTACTGGCCTTGCTGGCCGCCCTGGTTGCGGTGCGCATC
CTCTTCGAACGCACCTGGTTCCTCGGCTGGCTGCGCGGCACCTGCGGCTTGGCCTTCGTCGCCGTGGCGACG
CTGCTGCTGGTGCTCGCCTGGGACCTGCGCAGCTATTCGCTGCTCAAGCCCGAGCAGCCGATGGCCACCCTG
AGCTTCCAGGCCGAAGGGCCGCAGCGCTACCGGGTGCTGATCCAGGAGGGCGCCAACGAGCGCAGCGTGGTG
CTGGACGGCGAACTCTGGCAACTGGACGCGCGGATTTTCCGCTGGAAGGGGCTGGCCGCGTTGATCGGTCTG
GCGCCGGGCTATCGCCTCGACGCGCTCAGCGGCCGCTTCCTGGCCCTCGAGCAGCAGTCCCGGGGCCGCCGC
CTGGGCTTGTCGCAGAGTCCGCTGGGGGTCGATCTCTGGCGCTGGCTGCGGGCCGGCGAGCACGACCTGTTC
CTGTTCGAGCCGCTGGCGGGGCGGGTGACTTTCCTGCCGATGGCGGACAAGGCGGTGTTCGCGGTGAACTAC
GGCGTCGCCGGGCTGCTTGCCGAGCCGATGAACCTGGCGGCCGAGGAGGCGCTCAGGGACTGGCGCTAG
Translation:
MQYDGLAWAFALLALLAALVAVRILFERTWFLGWLRGTCGLAFVAVATLLLVLAWDLRSYSLLKPEQPMATL
SFQAEGPQRYRVLIQEGANERSVVLDGELWQLDARIFRWKGLAALIGLAPGYRLDALSGRFLALEQQSRGRR
LGLSQSPLGVDLWRWLRAGEHDLFLFEPLAGRVTFLPMADKAVFAVNYGVAGLLAEPMNLAAEEALRDWR*
AnnotationID:3677GeneID:3669
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 19:07:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1825
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:7341
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24483
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3669

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5871 PA1825_tr translation of PA1825 214 99.06 99.06 0 1089.0
164340 gb|AAG05214.1|AE004609_1 (AE004609) hypothetical protein PA1825 [Pseudomonas aeruginosa PAO1] 214 99.06 99.06 0 1089.0
GC ORFID: 46671How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1825Glimmer Score:
Start: 1303621Stop: 1304265
Length: 645
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1825 translation of PA1825Homolog Bit Score 424.0
Other Homologs: t_PA1825 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGTACGACGGTCTGGCCTGGGCATTCGCGTTACTGGCCTTGCTGGCCGCCCTGGTTGCGGTGCGCATC
CTCTTCGAACGCACCTGGTTCCTCGGCTGGCTGCGCGGCACCTGCGGCTTGGCCTTCGTCGCCGTGGCGACG
CTGCTGCTGGTGCTCGCCTGGGACCTGCGCAGCTATTCGCTGCTCAAGCCCGAGCAGCCGATGGCCACCCTG
AGCTTCCAGGCCGAAGGGCCGCAGCGCTACCGGGTGCTGATCCAGGAGGGCGCCAACGAGCGCAGCGTGGTG
CTGGACGGCGAACTCTGGCAACTGGACGCGCGGATTTTCCGCTGGAAGGGGCTGGCCGCGTTGATCGGTCTG
GCGCCGGGCTATCGCCTCGACGCGCTCAGCGGCCGCTTCCTGGCCCTCGAGCAGCAGTCCCGGGGCCGCCGC
CTGGGCTTGTCGCAGAGTCCGCTGGGGGTCGATCTCTGGCGCTGGCTGCGGGCCGGCGAGCACGACCTGTTC
CTGTTCGAGCCGCTGGCGGGGCGGGTGACTTTCCTGCCGATGGCGGACAAGGCGGTGTTCGCGGTGAACTAC
GGCGTCGCCGGGCTGCTTGCCGAGCCGATGAACCTGGCGGCCGAGGAGGCGCTCAGGGACTGGCGCTAG