ViewGene
Locus Name:
GeneID:
Location:

GeneID:3668
TrivialName: PA14_41240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41240
PAO1 Ortholog Locus:PA1801
Sequence Length:642
Protein Length:213
Start: 3680608
Stop: 3679967
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05190.1|AE004606_4 (AE004606) ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa PAO1]
Identities = 213/213 (100%), Positives = 213/213 (100%)
Sequence:
ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTG
GAGCAGTCCGCCCGCGGCGAGCGCGCCTACGACATCTATTCGCGCCTGCTGAAGGAGCGGATCATCTTCCTG
GTCGGCCAGGTCGAGGACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAGGCTGAAAATCCC
GAGAAGGACATTCATCTCTACATCAACTCGCCGGGTGGCTCGGTGACTGCCGGGATGTCCATCTACGACACC
ATGCAGTTCATCAAGCCCAACGTCTCGACCACCTGTATCGGTCAGGCGTGCAGCATGGGTGCCCTGCTGCTT
GCGGGCGGTGCCGCCGGCAAGCGCTACTGCCTGCCGCATTCGCGGATGATGATCCACCAGCCGCTGGGCGGT
TTCCAGGGCCAGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTCTTCATCAAGGAGCGTCTGAACCAG
ATCCTGGCGCACCACACCGGCCAGCCCCTGGACGTCATTGCCCGCGATACCGATCGTGACCGCTTCATGAGC
GGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGGTCATGACCCAGCGCGACCTGGCCGTCTAA
Translation:
MSRNSFIPHVPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENP
EKDIHLYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGG
FQGQASDIEIHAKEILFIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMTQRDLAV*
AnnotationID:3676GeneID:3668
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 13:01:31
Gene Name:clpP
Confidence Code:1
GeneProduct:ATP-dependent Clp protease proteolytic subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0740,pfam00574
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:3.4.21.92
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57195.1| (AE016869) ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 216

 Score =  349 bits (895), Expect = 7e-96
 Identities = 170/211 (80%), Positives = 189/211 (89%)

>gb|AAN67913.1|AE016423_8 (AE016782) ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pseudomonas putida KT2440]
          Length = 213

 Score =  345 bits (886), Expect = 8e-95
 Identities = 172/212 (81%), Positives = 189/212 (89%)

>gb|AAO08567.1|AE016797_22 (AE016797) ATP-dependent Clp protease, proteolytic subunit [Vibrio
           vulnificus CMCP6]
          Length = 208

 Score =  322 bits (826), Expect = 7e-88
 Identities = 157/191 (82%), Positives = 177/191 (92%)






 
Structural Features:
COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases 
[Posttranslational modification, protein turnover, chaperones / 
Intracellular trafficking and secretion]
CD-Length = 200 residues,  97.5% aligned
Score =  318 bits (816), Expect = 4e-88
Identities = 142/195 (72%), Positives = 171/195 (87%)

pfam00574, CLP_protease, Clp protease. 
CD-Length = 182 residues,  99.5% aligned
Score =  307 bits (787), Expect = 9e-85
Identities = 127/181 (70%), Positives = 156/181 (86%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7339




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24481




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37105




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3668_cdd.html


    		




 
URL:

















    ReferenceID:37803




  
Author/Investigator(s):
        Gilakjan ZA, Kropinski AM.





  
Title:
        Cloning and analysis of the capsid morphogenesis genes of Pseudomonas aeruginosa bacteriophage D3: another example of protein chain mail?




  
PubMed:
        10572124


MedLine:
        




    
Source:
J Bacteriol. 1999 Dec;181(23):7221-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10572124

















    ReferenceID:37804




  
Author/Investigator(s):
        Bertani I, Sevo M, Kojic M, Venturi V.





  
Title:
        Role of GacA, LasI, RhlI, Ppk, PsrA, Vfr and ClpXP in the regulation of the stationary-phase sigma factor rpoS/RpoS in Pseudomonas.




  
PubMed:
        12879217


MedLine:
        




    
Source:
Arch Microbiol. 2003 Oct;180(4):264-71. Epub 2003 Jul 23.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12879217









           
Homologs By Global Alignment 

           

       



     
Gene ID:3668
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5869
                           PA1801_tr
                           translation of PA1801
                           213
                           99.99
                           99.99
                           0
                           1091.0
     

     
     
164103
                           gb|AAG05190.1|AE004606_4
                           (AE004606) ATP-dependent Clp protease proteolytic subunit [Pseudomonas aeruginosa PAO1]
                           213
                           99.99
                           99.99
                           0
                           1091.0
     

     
     
164105
                           gb|AAN67913.1|AE016423_8
                           (AE016782) ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas putida KT2440]
                           213
                           80.75
                           88.73
                           0
                           884.0
     

     
     
164104
                           gb|AAO57195.1|
                           (AE016869) ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas syringae pv. tomato str. DC3000]
                           216
                           78.70
                           87.50
                           3
                           894.0
     

     
     
164110
                           gb|AAN54847.1|AE015623_9
                           (AE015623) ATP-dependent Clp protease, proteolytic subunit [Shewanella oneidensis MR-1]
                           213
                           73.70
                           85.91
                           11
                           811.0
     

     






      

          
GC ORFID: 46670How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1801Glimmer Score: 

          
Start: 1273301Stop: 1273942

          
Length: 642


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1801 translation of PA1801Homolog Bit Score 424.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene776 (ORF: BLASTX 349.0), t_PA1801 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTG 
GAGCAGTCCGCCCGCGGCGAGCGCGCCTACGACATCTATTCGCGCCTGCTGAAGGAGCGGATCATCTTCCTG 
GTCGGCCAGGTCGAGGACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAGGCTGAAAATCCC 
GAGAAGGACATTCATCTCTACATCAACTCGCCGGGTGGCTCGGTGACTGCCGGGATGTCCATCTACGACACC 
ATGCAGTTCATCAAGCCCAACGTCTCGACCACCTGTATCGGTCAGGCGTGCAGCATGGGTGCCCTGCTGCTT 
GCGGGCGGTGCCGCCGGCAAGCGCTACTGCCTGCCGCATTCGCGGATGATGATCCACCAGCCGCTGGGCGGT 
TTCCAGGGCCAGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTCTTCATCAAGGAGCGTCTGAACCAG 
ATCCTGGCGCACCACACCGGCCAGCCCCTGGACGTCATTGCCCGCGATACCGATCGTGACCGCTTCATGAGC 
GGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGGTCATGACCCAGCGCGACCTGGCCGTCTAA