ViewGene
Locus Name:
GeneID:
Location:

GeneID:3667
TrivialName: PA14_42260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42260
PAO1 Ortholog Locus:PA1724
Sequence Length:621
Protein Length:206
Start: 3769910
Stop: 3769290
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05113.1|AE004598_12 (AE004598) type III export protein PscK [Pseudomonas aeruginosa PAO1]
Identities = 205/208 (98%), Positives = 206/208 (99%), Gaps = 2/208 (0%)
Sequence:
ATGCCATTGACGGCCTACCAGTTGCGCTTCTGCCCGGCCCGCTACATCCACGAGTCGCACCTGCCCGCGGTA
TTGCTGCGGTTGCTGCCGGCGCTGCCGGACTGGCGGCGACAGAGCGTTCTCAACGCCTGGCTGCTGGAGCAA
CTGGAATTGGACTGCGCGTTCCGCATGCCCGCGCAACTGGGCGGGCTGGCCCTTTACCCGCAGGCGGCGCTG
GAACGGACCCTGGGCTGGCTCGGTGCGCTGCTGCACGGCCAGGCCTTGCGGCAGGTGCTGGACGGTGCGCGG
GTACGGCGCATCCGCGCGCAGATCGGCGAACAGGGCCAGCGTTTCTGCCTGGAGCAGCTCGACCTGCTCATC
GGTCGCTGGCCGCCCGGCTGGCAGCGGGCCTTGCCGGAAAACCCGGAAGACGGCTATTTCCGGCGCTGCGGC
CTGGCTTTCTGGCTGGCCGCCTGTAGCGATGCCGACTGCGGTTTCTCGCGGCGCCTGCGCCTGCGCCTGGAG
GCCATGCCGGCCCCGGCGGACTGGACTTTCGACGAACAACGGCGATCCCTGGCGCGGACCCTGTGCCTGAAG
GTCGCCCGACAAGCGAGCGATGAATGCTTCCATTTGTTGAACTAG
Translation:
MPLTAYQLRFCPARYIHESHLPAVLLRLLPALPDWRRQSVLNAWLLEQLELDCAFRMPAQLGGLALYPQAAL
ERTLGWLGALLHGQALRQVLDGARVRRIRAQIGEQGQRFCLEQLDLLIGRWPPGWQRALPENPEDGYFRRCG
LAFWLAACSDADCGFSRRLRLRLEAMPAPADWTFDEQRRSLARTLCLKVARQASDECFHLLN*
AnnotationID:3675GeneID:3667
AnnotatorUID: diggins
Modification Date/Time: 2006-01-22 16:04:47
Gene Name:pscK
Confidence Code:1
GeneProduct:PscK type III export protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO18026.1| (AY144116) LscK [Photorhabdus luminescens]
          Length = 208

 Score =  203 bits (517), Expect = 5e-52
 Identities = 97/203 (47%), Positives = 125/203 (61%)

>gb|AAC69774.1| (AF074612) type III secretion protein [Yersinia pestis KIM]
          Length = 209

 Score =  157 bits (397), Expect = 4e-38
 Identities = 82/202 (40%), Positives = 117/202 (57%)

>emb|CAB54937.1| (AL117189) putative type III secretion protein [Yersinia pestis]
          Length = 209

 Score =  157 bits (397), Expect = 4e-38
 Identities = 82/202 (40%), Positives = 117/202 (57%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7337




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24479




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38264




  
Author/Investigator(s):
        Yahr TL, Goranson J, Frank DW.





  
Title:
        Exoenzyme S of Pseudomonas aeruginosa is secreted by a type III pathway.




  
PubMed:
        8971719


MedLine:
        




    
Source:
Mol Microbiol. 1996 Dec;22(5):991-1003.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=97126825&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:3667
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5868
                           PA1724_tr
                           translation of PA1724
                           208
                           98.55
                           99.03
                           2
                           1091.0
     

     
     
164091
                           gb|AAG05113.1|AE004598_12
                           (AE004598) type III export protein PscK [Pseudomonas aeruginosa PAO1]
                           208
                           98.55
                           99.03
                           2
                           1091.0
     

     
     
164092
                           gb|AAC44782.1|
                           (U56077) PscK [Pseudomonas aeruginosa]
                           209
                           85.64
                           87.55
                           6
                           926.0
     

     
     
164093
                           gb|AAO18026.1|
                           (AY144116) LscK [Photorhabdus luminescens]
                           208
                           46.63
                           60.09
                           2
                           514.0
     

     
     
164094
                           emb|CAE16158.1|
                           (BX571871) Type III secretion component protein SctK [Photorhabdus luminescens subsp. laumondii TTO1]
                           208
                           46.15
                           60.09
                           2
                           513.0
     

     






      

          
GC ORFID: 46669How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1724Glimmer Score: 

          
Start: 1183999Stop: 1184619

          
Length: 621


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1724 translation of PA1724Homolog Bit Score 424.0

          
Other Homologs:  t_PA1724 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCATTGACGGCCTACCAGTTGCGCTTCTGCCCGGCCCGCTACATCCACGAGTCGCACCTGCCCGCGGTA 
TTGCTGCGGTTGCTGCCGGCGCTGCCGGACTGGCGGCGACAGAGCGTTCTCAACGCCTGGCTGCTGGAGCAA 
CTGGAATTGGACTGCGCGTTCCGCATGCCCGCGCAACTGGGCGGGCTGGCCCTTTACCCGCAGGCGGCGCTG 
GAACGGACCCTGGGCTGGCTCGGTGCGCTGCTGCACGGCCAGGCCTTGCGGCAGGTGCTGGACGGTGCGCGG 
GTACGGCGCATCCGCGCGCAGATCGGCGAACAGGGCCAGCGTTTCTGCCTGGAGCAGCTCGACCTGCTCATC 
GGTCGCTGGCCGCCCGGCTGGCAGCGGGCCTTGCCGGAAAACCCGGAAGACGGCTATTTCCGGCGCTGCGGC 
CTGGCTTTCTGGCTGGCCGCCTGTAGCGATGCCGACTGCGGTTTCTCGCGGCGCCTGCGCCTGCGCCTGGAG 
GCCATGCCGGCCCCGGCGGACTGGACTTTCGACGAACAACGGCGATCCCTGGCGCGGACCCTGTGCCTGAAG 
GTCGCCCGACAAGCGAGCGATGAATGCTTCCATTTGTTGAACTAG