ViewGene

Locus Name:
GeneID:
Location:

GeneID:3666
TrivialName: PA14_48550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48550
PAO1 Ortholog Locus:PA1219
Sequence Length:615
Protein Length:204
Start: 4317337
Stop: 4317951
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04608.1|AE004551_12 (AE004551) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 204/204 (100%), Positives = 204/204 (100%)
Sequence:
ATGCTGATCCTGCTGCCTGACTTCATCGGCCACCCGAGCTGCTTCCGCGGGCTGCTGGCACGCCTCGGCGCA
ACGGACTGCCGGCTGGTCGACTACCACCGGCTGGATGCCTACGCCAGCATCGAAGCCCTCGCCAGCCAGGTA
CTCGACGGCCTGGCGGAAGAACCGGACTGGCTGATCGGCTATTCCTTCGGCGGCCTGGTCGGCTACGAGATG
GCCCGCCAGTTGCCGGCCAGCCGCCTGCTGATGATCGACAGCCACCTGCCCTGGCCGGCCCTGCGGCGAATG
CCGCCAAGCGAGCAATACCAGCGCTGGCTGAGCGCCGAGATGCGCGAGTGGATCGCCCTGATGAGCGAGCTT
GGCGAACTGCGCGAAGAGGTCCTGCTGCGCAATGTCGAGCTGTTCGGCCGCTGGCAGCCCCGCCATCGCCTC
GCCCGCGCCAGCTGGGTGCGCTGCCGGGACGACGCCGGCCGCGACCCGGCCGCCGAACGCTGGTGCGACCTG
ATCGAGCGGCTCGACACCTTCCCCTGCGAGCGTCCGCACCACCTGGCCCTGCAGGACCCGGCGGTGATCGAT
TTCATCGTCCACACCGTCAGCAAGGAGTCCGTCCAATGA
Translation:
MLILLPDFIGHPSCFRGLLARLGATDCRLVDYHRLDAYASIEALASQVLDGLAEEPDWLIGYSFGGLVGYEM
ARQLPASRLLMIDSHLPWPALRRMPPSEQYQRWLSAEMREWIALMSELGELREEVLLRNVELFGRWQPRHRL
ARASWVRCRDDAGRDPAAERWCDLIERLDTFPCERPHHLALQDPAVIDFIVHTVSKESVQ*
AnnotationID:3674GeneID:3666
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 06:06:13
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1219
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7335
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24477
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36493
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3666_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3666

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5867 PA1219_tr translation of PA1219 204 99.99 99.99 0 1091.0
164090 gb|AAG04608.1|AE004551_12 (AE004551) hypothetical protein PA1219 [Pseudomonas aeruginosa PAO1] 204 99.99 99.99 0 1091.0
GC ORFID: 46668How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1219Glimmer Score:
Start: 636571Stop: 635957
Length: 615
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1219 translation of PA1219Homolog Bit Score 424.0
Other Homologs: t_PA1219 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGATCCTGCTGCCTGACTTCATCGGCCACCCGAGCTGCTTCCGCGGGCTGCTGGCACGCCTCGGCGCA
ACGGACTGCCGGCTGGTCGACTACCACCGGCTGGATGCCTACGCCAGCATCGAAGCCCTCGCCAGCCAGGTA
CTCGACGGCCTGGCGGAAGAACCGGACTGGCTGATCGGCTATTCCTTCGGCGGCCTGGTCGGCTACGAGATG
GCCCGCCAGTTGCCGGCCAGCCGCCTGCTGATGATCGACAGCCACCTGCCCTGGCCGGCCCTGCGGCGAATG
CCGCCAAGCGAGCAATACCAGCGCTGGCTGAGCGCCGAGATGCGCGAGTGGATCGCCCTGATGAGCGAGCTT
GGCGAACTGCGCGAAGAGGTCCTGCTGCGCAATGTCGAGCTGTTCGGCCGCTGGCAGCCCCGCCATCGCCTC
GCCCGCGCCAGCTGGGTGCGCTGCCGGGACGACGCCGGCCGCGACCCGGCCGCCGAACGCTGGTGCGACCTG
ATCGAGCGGCTCGACACCTTCCCCTGCGAGCGTCCGCACCACCTGGCCCTGCAGGACCCGGCGGTGATCGAT
TTCATCGTCCACACCGTCAGCAAGGAGTCCGTCCAATGA