ViewGene
Locus Name:
GeneID:
Location:

GeneID:3665
TrivialName: PA14_08400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08400
PAO1 Ortholog Locus:PA0655
Sequence Length:648
Protein Length:215
Start: 720166
Stop: 719519
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04044.1|AE004500_10 (AE004500) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 215/215 (100%), Positives = 215/215 (100%)
Sequence:
ATGTCCGCCGACCGCCACTATTCGCCCATCGACCGTTTCCTGCTGCAGGCCGACTCCGCCCTGCGCACCCTG
CTGCCGTTCAGCGGCCAGCCGGCGCGACCGTCGCCGGCCATCGTGGAACCCGATGGCGAACTGAGCGAGGAA
GACACCCGCCATATCGCCGGCCTGATGCGCATCAACCACACCGGCGAGGTCTGCGCCCAGGCGCTGTACCAG
GGCCAGTCGCTGACCGCCAAGCTGCCCGAGGTCCGCGAGGCGATGGAGGAAGCCGCCGAGGAGGAGATCGAC
CACCTGGCCTGGTGCGAGCAACGCATCCGCCAGTTGGGCAGCCGTCCCAGCGTCCTCAATCCGATCTTCTAC
GGCCTGTCCTTCGGCGTCGGTGCCGCCGCCGGGCTGGTCAGCGACCGGGTCAGCCTGGGCTTCGTCGCCGCC
ACCGAAGACCAGGTGTGCAAGCATCTGGACGAACACCTGGCGCAGATTCCCCAGGAGGATCGGAAATCCCGT
GCCATCCTCGAGCAGATGCGTATCGACGAGGAACAGCATTCGAGCAACGCCCTGGCCGCCGGCGGCCTGCGC
TTCCCGGCACCGGTGAAGCTGGGCATGAGCCTGCTGGCGAAGGTGATGACCAAGAGCACCTACCGCATCTGA
Translation:
MSADRHYSPIDRFLLQADSALRTLLPFSGQPARPSPAIVEPDGELSEEDTRHIAGLMRINHTGEVCAQALYQ
GQSLTAKLPEVREAMEEAAEEEIDHLAWCEQRIRQLGSRPSVLNPIFYGLSFGVGAAAGLVSDRVSLGFVAA
TEDQVCKHLDEHLAQIPQEDRKSRAILEQMRIDEEQHSSNALAAGGLRFPAPVKLGMSLLAKVMTKSTYRI*
AnnotationID:3673GeneID:3665
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 18:06:52
Gene Name:
Confidence Code:3
GeneProduct:putative ubiquinone biosynthesis protein
Cell Localization:()
Synonyms:PA0655
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2941,cd01042
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM35377.1| (AE011675) ubiquinone biosynthesis protein [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 217

 Score =  206 bits (523), Expect = 1e-52
 Identities = 110/216 (50%), Positives = 139/216 (64%), Gaps = 3/216 (1%)

>gb|AAM39793.1| (AE012145) ubiquinone biosynthesis protein [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
          Length = 217

 Score =  200 bits (508), Expect = 6e-51
 Identities = 106/211 (50%), Positives = 138/211 (65%), Gaps = 3/211 (1%)






 
Structural Features:
COG2941, CAT5, Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
CD-Length = 204 residues, 100.0% aligned
Score =  269 bits (689), Expect = 2e-73
Identities = 110/206 (53%), Positives = 146/206 (70%), Gaps = 2/206 (0%)

cd01042, DMQH, Demethoxyubiquinone hydroxylases
CD-Length = 165 residues, 100.0% aligned
Score =  193 bits (491), Expect = 2e-50







   
Genomic Context:






   
Comment:


















    ReferenceID:7333




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24475




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34609




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3665_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3665
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5866
                           PA0655_tr
                           translation of PA0655
                           215
                           99.99
                           99.99
                           0
                           1092.0
     

     
     
164076
                           gb|AAG04044.1|AE004500_10
                           (AE004500) hypothetical protein PA0655 [Pseudomonas aeruginosa PAO1]
                           215
                           99.99
                           99.99
                           0
                           1092.0
     

     
     
164077
                           gb|AAN66057.1|AE016234_10
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           215
                           82.32
                           91.16
                           0
                           944.0
     

     
     
164078
                           gb|AAO54141.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           215
                           78.13
                           86.97
                           0
                           877.0
     

     
     
164079
                           emb|CAD16561.1|
                           (AL646072) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           220
                           51.81
                           69.54
                           14
                           566.0
     

     






      

          
GC ORFID: 46667How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0655Glimmer Score: 

          
Start: 6521509Stop: 6520862

          
Length: 648


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0655 translation of PA0655Homolog Bit Score 425.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2400 (ORF: BLASTX 338.0), t_PA0655 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCCGACCGCCACTATTCGCCCATCGACCGTTTCCTGCTGCAGGCCGACTCCGCCCTGCGCACCCTG 
CTGCCGTTCAGCGGCCAGCCGGCGCGACCGTCGCCGGCCATCGTGGAACCCGATGGCGAACTGAGCGAGGAA 
GACACCCGCCATATCGCCGGCCTGATGCGCATCAACCACACCGGCGAGGTCTGCGCCCAGGCGCTGTACCAG 
GGCCAGTCGCTGACCGCCAAGCTGCCCGAGGTCCGCGAGGCGATGGAGGAAGCCGCCGAGGAGGAGATCGAC 
CACCTGGCCTGGTGCGAGCAACGCATCCGCCAGTTGGGCAGCCGTCCCAGCGTCCTCAATCCGATCTTCTAC 
GGCCTGTCCTTCGGCGTCGGTGCCGCCGCCGGGCTGGTCAGCGACCGGGTCAGCCTGGGCTTCGTCGCCGCC 
ACCGAAGACCAGGTGTGCAAGCATCTGGACGAACACCTGGCGCAGATTCCCCAGGAGGATCGGAAATCCCGT 
GCCATCCTCGAGCAGATGCGTATCGACGAGGAACAGCATTCGAGCAACGCCCTGGCCGCCGGCGGCCTGCGC 
TTCCCGGCACCGGTGAAGCTGGGCATGAGCCTGCTGGCGAAGGTGATGACCAAGAGCACCTACCGCATCTGA