ViewGene
Locus Name:
GeneID:
Location:

GeneID:3664
TrivialName: PA14_63900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63900
PAO1 Ortholog Locus:PA4833
Sequence Length:618
Protein Length:205
Start: 5694739
Stop: 5695356
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08218.1|AE004896_8 (AE004896) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 205/205 (100%), Positives = 205/205 (100%)
Sequence:
ATGTATCACGGTGAAAGACTCAATGCCTGGACCCACCTGATCGGTGCGGTCGCCGCCTGCACCGGCGCCGTC
TGGCTGACGGTCCAGGCGAGCCTCAACGGCAGTCCATGGAAGATCGTCGGGGTCGGCGTCTACGGCGTCACC
CTGACGCTGCTCTACAGCATCTCGACCGCCTACCACAGCGTGCGCGGGCGAGCGAAGGTGGTGATGCGCAAG
CTCGACCACCTGTCCATCTACCTGCTGATCGCCGGCAGCTACACGCCTTTCTGCCTGGTCACGCTGCGCGGT
CCCTGGGGCTGGACGCTGTTCGGCATCGTCTGGGGCCTGGCGGTGCTCGGCATGCTCCAGGAGATCAAGCCA
CGCTCCGAGGCGCGGGTGCTGTCGGTGGTGATCTACGCGGTGATGGGCTGGATCGTGCTGATCGCGGTGAAA
CCGCTGCTCGCCGCCCTCGGCAGCGCCGGCTTCACCTGGCTGGCGGCCGGCGGCGTGCTCTATACCGTAGGG
ATCGTCTTCTATGCCTATGACCACCGCTTCCGCCACTGGCATGGCATCTGGCACCTGTTCGTGATCGCCGGC
AGCCTCCTCCACTTCGTGGCGATCTGGCGCTACGTACTCTAG
Translation:
MYHGERLNAWTHLIGAVAACTGAVWLTVQASLNGSPWKIVGVGVYGVTLTLLYSISTAYHSVRGRAKVVMRK
LDHLSIYLLIAGSYTPFCLVTLRGPWGWTLFGIVWGLAVLGMLQEIKPRSEARVLSVVIYAVMGWIVLIAVK
PLLAALGSAGFTWLAAGGVLYTVGIVFYAYDHRFRHWHGIWHLFVIAGSLLHFVAIWRYVL*
AnnotationID:3672GeneID:3664
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:51
Gene Name:
Confidence Code:3
GeneProduct:putative hemolyin III
Cell Localization:()
Synonyms:PA4833
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1272
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70552.1|AE016697_7 (AE016792) channel protein, hemolysin III family [Pseudomonas
           putida KT2440]
          Length = 205

 Score =  355 bits (910), Expect = 1e-97
 Identities = 161/204 (78%), Positives = 182/204 (89%)

>gb|AAO58504.1| (AE016874) hemolysin III [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 204

 Score =  327 bits (838), Expect = 3e-89
 Identities = 150/205 (73%), Positives = 178/205 (86%), Gaps = 1/205 (0%)






 
Structural Features:
COG1272, Predicted membrane protein, hemolysin III homolog
CD-Length = 226 residues,  92.0% aligned
Score =  195 bits (496), Expect = 5e-51
Identities = 103/208 (49%), Positives = 137/208 (65%), Gaps = 3/208 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7331




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24473




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35225




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3664_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3664
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5865
                           PA4833_tr
                           translation of PA4833
                           205
                           99.99
                           99.99
                           0
                           1092.0
     

     
     
164037
                           gb|AAG08218.1|AE004896_8
                           (AE004896) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           205
                           99.99
                           99.99
                           0
                           1092.0
     

     
     
164038
                           gb|AAN70552.1|AE016697_7
                           (AE016792) channel protein, hemolysin III family [Pseudomonas putida KT2440]
                           205
                           78.53
                           88.78
                           0
                           908.0
     

     
     
164039
                           gb|AAO58504.1|
                           (AE016874) hemolysin III [Pseudomonas syringae pv. tomato str. DC3000]
                           205
                           73.17
                           86.82
                           1
                           840.0
     

     
     
164040
                           gb|AAQ61006.1|
                           (AE016922) probable hemolysin III [Chromobacterium violaceum ATCC 12472]
                           205
                           55.60
                           71.21
                           0
                           640.0
     

     






      

          
GC ORFID: 46666How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4833Glimmer Score: 

          
Start: 4958419Stop: 4959036

          
Length: 618


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4833 translation of PA4833Homolog Bit Score 425.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3326 (ORF: BLASTX 332.0), t_PA4833 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTATCACGGTGAAAGACTCAATGCCTGGACCCACCTGATCGGTGCGGTCGCCGCCTGCACCGGCGCCGTC 
TGGCTGACGGTCCAGGCGAGCCTCAACGGCAGTCCATGGAAGATCGTCGGGGTCGGCGTCTACGGCGTCACC 
CTGACGCTGCTCTACAGCATCTCGACCGCCTACCACAGCGTGCGCGGGCGAGCGAAGGTGGTGATGCGCAAG 
CTCGACCACCTGTCCATCTACCTGCTGATCGCCGGCAGCTACACGCCTTTCTGCCTGGTCACGCTGCGCGGT 
CCCTGGGGCTGGACGCTGTTCGGCATCGTCTGGGGCCTGGCGGTGCTCGGCATGCTCCAGGAGATCAAGCCA 
CGCTCCGAGGCGCGGGTGCTGTCGGTGGTGATCTACGCGGTGATGGGCTGGATCGTGCTGATCGCGGTGAAA 
CCGCTGCTCGCCGCCCTCGGCAGCGCCGGCTTCACCTGGCTGGCGGCCGGCGGCGTGCTCTATACCGTAGGG 
ATCGTCTTCTATGCCTATGACCACCGCTTCCGCCACTGGCATGGCATCTGGCACCTGTTCGTGATCGCCGGC 
AGCCTCCTCCACTTCGTGGCGATCTGGCGCTACGTACTCTAG