ViewGene
Locus Name:
GeneID:
Location:

GeneID:3663
TrivialName: PA14_16150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16150
PAO1 Ortholog Locus:PA3731
Sequence Length:696
Protein Length:231
Start: 1375234
Stop: 1375929
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07118.1|AE004792_3 (AE004792) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 230/231 (99%), Positives = 231/231 (100%)
Sequence:
ATGACGGTATGGAGCAAGCTGCTGAGCGCCCTGCGCGGCGGAGCCAACGAGGTTGGCGAGGCGATCGTCGAC
AGCCAGGCGCTGCGCATCCTCGACCAGGAGATCCGCGACGCCGACATCGAACTGCGCAAGTCGCGGGAAGCG
CTGGCCTCGATCATGGCCCGCCACCGCCTGGCCCAGGAGCGCGTCGAGAAGGGCGCGGCCCAGGTCGCCGAG
TACGAGCAATACGCGATCAAGGCACTGGAGGCCGGCAACGAGGAGCTGGCCCGGGAAGTCGCGGAGAAGATC
GCGACCCTGGAGAACCAGCTTGAGGGCGAGCGTGCCCAGGTCGCGGAATTCGCCGCCAGCGTAGCCCAGTTG
CGCAAGTCGGTGAGCCAGGCCGAAGGCAACATCCGCCAGCTCAAGCAACAGGTGGATACGGTCAAGGCCACC
GAGAGCGTGCAGAAGGCGCAGATGGCCGTTGCCCAGCGCTACGGCAACTCGAAGAGCAAGCTGCAGACCGCG
GTGGACTCCCTGGAGCGGATCAAGCAGCGCCAGGCCGAACGCGCGGCGACCATGGATGCCGCGGCCGAACTG
GCCAGCGCGGCGGCGCCGGACGATGCGCTGGACGCCAAGCTGCGCGCGGCCGGGATCAAGGCCTCGGGCAAC
AGCGTGGATGGCGTGCTGGCGCGCCTGAAGGAAAAGGGCAAGGCCTGA
Translation:
MTVWSKLLSALRGGANEVGEAIVDSQALRILDQEIRDADIELRKSREALASIMARHRLAQERVEKGAAQVAE
YEQYAIKALEAGNEELAREVAEKIATLENQLEGERAQVAEFAASVAQLRKSVSQAEGNIRQLKQQVDTVKAT
ESVQKAQMAVAQRYGNSKSKLQTAVDSLERIKQRQAERAATMDAAAELASAAAPDDALDAKLRAAGIKASGN
SVDGVLARLKEKGKA*
AnnotationID:3671GeneID:3663
AnnotatorUID: diggins
Modification Date/Time: 2005-06-15 07:07:29
Gene Name:
Confidence Code:4
GeneProduct:putative phage shock protein
Cell Localization:()
Synonyms:PA3731
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04012,COG1842
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57255.1| (AE016869) PspA/IM30 family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 235

 Score =  192 bits (489), Expect = 1e-48
 Identities = 106/229 (46%), Positives = 155/229 (67%), Gaps = 1/229 (0%)







 
Structural Features:
pfam04012, PspA_IM30, PspA/IM30 family.
CD-Length = 220 residues,  98.2% aligned
Score =  100 bits (250), Expect = 3e-22
Identities = 93/226 (41%), Positives = 133/226 (58%), Gaps = 10/226 (4%)

COG1842, PspA, Phage shock protein A (IM30), 
suppresses sigma54-dependent transcription 
[Transcription / Signal transduction mechanisms]
CD-Length = 225 residues,  98.7% aligned
Score = 90.0 bits (223), Expect = 5e-19
Identities = 76/231 (32%), Positives = 132/231 (57%), Gaps = 9/231 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7329




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24471




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31825




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3663_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3663
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5864
                           PA3731_tr
                           translation of PA3731
                           231
                           99.56
                           99.99
                           0
                           1093.0
     

     
     
164030
                           gb|AAG07118.1|AE004792_3
                           (AE004792) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           231
                           99.56
                           99.99
                           0
                           1093.0
     

     
     
164031
                           gb|AAO57255.1|
                           (AE016869) PspA/IM30 family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           236
                           44.91
                           65.67
                           6
                           490.0
     

     
     
164034
                           emb|CAE16685.1|
                           (BX571873) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           231
                           44.15
                           60.17
                           4
                           456.0
     

     
     
164035
                           gb|AAN56746.1|AE015810_5
                           (AE015810) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           231
                           40.69
                           59.30
                           2
                           414.0
     

     






      

          
GC ORFID: 46665How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3731Glimmer Score: 

          
Start: 3578703Stop: 3578008

          
Length: 696


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3731 translation of PA3731Homolog Bit Score 425.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene726 (ORF: BLASTX 189.0), t_PA3731 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGGTATGGAGCAAGCTGCTGAGCGCCCTGCGCGGCGGAGCCAACGAGGTTGGCGAGGCGATCGTCGAC 
AGCCAGGCGCTGCGCATCCTCGACCAGGAGATCCGCGACGCCGACATCGAACTGCGCAAGTCGCGGGAAGCG 
CTGGCCTCGATCATGGCCCGCCACCGCCTGGCCCAGGAGCGCGTCGAGAAGGGCGCGGCCCAGGTCGCCGAG 
TACGAGCAATACGCGATCAAGGCACTGGAGGCCGGCAACGAGGAGCTGGCCCGGGAAGTCGCGGAGAAGATC 
GCGACCCTGGAGAACCAGCTTGAGGGCGAGCGTGCCCAGGTCGCGGAATTCGCCGCCAGCGTAGCCCAGTTG 
CGCAAGTCGGTGAGCCAGGCCGAAGGCAACATCCGCCAGCTCAAGCAACAGGTGGATACGGTCAAGGCCACC 
GAGAGCGTGCAGAAGGCGCAGATGGCCGTTGCCCAGCGCTACGGCAACTCGAAGAGCAAGCTGCAGACCGCG 
GTGGACTCCCTGGAGCGGATCAAGCAGCGCCAGGCCGAACGCGCGGCGACCATGGATGCCGCGGCCGAACTG 
GCCAGCGCGGCGGCGCCGGACGATGCGCTGGACGCCAAGCTGCGCGCGGCCGGGATCAAGGCCTCGGGCAAC 
AGCGTGGATGGCGTGCTGGCGCGCCTGAAGGAAAAGGGCAAGGCCTGA