ViewGene
Locus Name:
GeneID:
Location:

GeneID:3662
TrivialName: PA14_25820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25820
PAO1 Ortholog Locus:PA2955
Sequence Length:633
Protein Length:210
Start: 2253672
Stop: 2254304
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06343.1|AE004721_11 (AE004721) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 210/210 (100%), Positives = 210/210 (100%)
Sequence:
ATGTTGCACCTGTTCCGTATCGCCCTGGCGATGCTCCTCCTGGGCAGCCTGTCCGCCTGCATGAAGCCCAGC
GACCTGGCCGACGGCGCCGACTACTACCTGCGCGACGCCGGGGTGCTCGATCACAGCGCCAGCCAGCGCAGC
AACAACCGGCGGATCCAGGCCGACTCCTTCATCTACATCGGCCAGGGCCCGTTCGTGCCGCCGGGCTACCGG
TACGCGCGGCCGAACGTGGTGGCCGAGCAGGCCTTCGAAGGTTTCGTCGAGTATTTCCCGCTGGTGCGCCGC
GCCAAGGCGCCGCTCGGCCTGGACGACGCGATGCGCGAGGCGCGTGCCGCCGGCGCCCACTACCTGCTGTAC
TGCCGTTTCGCCCGGGGCGACAACAGGATCGGCAACTGGGAGGAGTGGGAAGACGAAGAGGAACTCGGCCGG
GTCGGGCGCGATCGCAGTGTCATCCAGGTCATGCTGATCGAGACCAGCACCCGTTTCCTAGTGGACAGCGCG
ACCATTCGCAGCCGCGGCGGTTTCCTGACGTTCTACGACGCCACCCCGGAAGACCTGCTGCGTCCGCCGCTG
GAGCAATACGCCCAGGAATTGCTGGGCCTGAACAGTCGAGGAACAGGCTATGAGTGA
Translation:
MLHLFRIALAMLLLGSLSACMKPSDLADGADYYLRDAGVLDHSASQRSNNRRIQADSFIYIGQGPFVPPGYR
YARPNVVAEQAFEGFVEYFPLVRRAKAPLGLDDAMREARAAGAHYLLYCRFARGDNRIGNWEEWEDEEELGR
VGRDRSVIQVMLIETSTRFLVDSATIRSRGGFLTFYDATPEDLLRPPLEQYAQELLGLNSRGTGYE*
AnnotationID:3670GeneID:3662
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 18:06:22
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA2955
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57289.1| (AE016869) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 200

 Score =  263 bits (673), Expect = 4e-70
 Identities = 127/197 (64%), Positives = 157/197 (79%)

>gb|AAN67585.1|AE016388_5 (AE016781) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 201

 Score =  232 bits (592), Expect = 1e-60
 Identities = 112/199 (56%), Positives = 153/199 (76%), Gaps = 1/199 (0%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7327




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24469




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3662
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5863
                           PA2955_tr
                           translation of PA2955
                           210
                           99.99
                           99.99
                           0
                           1092.0
     

     
     
164027
                           gb|AAG06343.1|AE004721_11
                           (AE004721) hypothetical protein PA2955 [Pseudomonas aeruginosa PAO1]
                           210
                           99.99
                           99.99
                           0
                           1092.0
     

     
     
164028
                           gb|AAO57289.1|
                           (AE016869) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           210
                           60.47
                           74.76
                           10
                           672.0
     

     
     
164029
                           gb|AAN67585.1|AE016388_5
                           (AE016781) lipoprotein, putative [Pseudomonas putida KT2440]
                           211
                           53.08
                           72.51
                           11
                           594.0
     

     






      

          
GC ORFID: 46664How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2955Glimmer Score: 

          
Start: 2700253Stop: 2699621

          
Length: 633


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2955 translation of PA2955Homolog Bit Score 425.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2619 (ORF: BLASTX 260.0), t_PA2955 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGCACCTGTTCCGTATCGCCCTGGCGATGCTCCTCCTGGGCAGCCTGTCCGCCTGCATGAAGCCCAGC 
GACCTGGCCGACGGCGCCGACTACTACCTGCGCGACGCCGGGGTGCTCGATCACAGCGCCAGCCAGCGCAGC 
AACAACCGGCGGATCCAGGCCGACTCCTTCATCTACATCGGCCAGGGCCCGTTCGTGCCGCCGGGCTACCGG 
TACGCGCGGCCGAACGTGGTGGCCGAGCAGGCCTTCGAAGGTTTCGTCGAGTATTTCCCGCTGGTGCGCCGC 
GCCAAGGCGCCGCTCGGCCTGGACGACGCGATGCGCGAGGCGCGTGCCGCCGGCGCCCACTACCTGCTGTAC 
TGCCGTTTCGCCCGGGGCGACAACAGGATCGGCAACTGGGAGGAGTGGGAAGACGAAGAGGAACTCGGCCGG 
GTCGGGCGCGATCGCAGTGTCATCCAGGTCATGCTGATCGAGACCAGCACCCGTTTCCTAGTGGACAGCGCG 
ACCATTCGCAGCCGCGGCGGTTTCCTGACGTTCTACGACGCCACCCCGGAAGACCTGCTGCGTCCGCCGCTG 
GAGCAATACGCCCAGGAATTGCTGGGCCTGAACAGTCGAGGAACAGGCTATGAGTGA