ViewGene
Locus Name:
GeneID:
Location:

GeneID:3661
TrivialName: PA14_32650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32650
PAO1 Ortholog Locus:PA2473
Sequence Length:645
Protein Length:214
Start: 2836152
Stop: 2835508
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05861.1|AE004675_2 (AE004675) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
Identities = 211/214 (98%), Positives = 212/214 (99%)
Sequence:
ATGCAGCTCTACAGCTTCTTCAACAGCTCCACGTCCTATCGGGTGCGTATCGCATTGGCCCTGAAAGGTCTG
GATTACCAGGTAGTGCCGGTCAACCTGCGGCAGGGCGAGCAACTGCGCCCGGCCGACCGCCAGCGCAACCCG
CTGGGCGCGCTGCCGACCCTGGTCGACGCCGACGGCCGTCGGTTCAGCCAGTCGCTGGCGATCATCGACTAC
CTCGACGCCGTGCAGCCCGAACCGCGCCTGATCCCTCTCGACCCACTGCATCGCGCCCAGGCGCTGGAACTG
GCCCTGCTGGTGGCCTGCGACATCCATCCGCTGAACAACGTGCGGGTGCTCAAGTACCTGACCCAGGTCCTC
GGCATAGACGCCGAGGACCGCCAGCGCTGGTACGCGCACTGGGTCGCCGAGGGCCTGGCGGCGGCGGAGACC
CTGCTGAACCGACACCGTCGCGGCGCCTTCTTCGCCGGCACCGCAGCGGGCATCGTCGAGTGCTGCCTGGTG
CCGCAACTGGCCAACGCCCGGCGCATGGGCTGTGTCCTGGCGCCCTACCCGGCGTTGCTCGAACTGGAGGGG
CGCTGCCTGGCGCTCGAAGCCTTCCAGCGCGCCAGCCCCGAGCGCCAGCCCGACTACCTCCCGGACTGA
Translation:
MQLYSFFNSSTSYRVRIALALKGLDYQVVPVNLRQGEQLRPADRQRNPLGALPTLVDADGRRFSQSLAIIDY
LDAVQPEPRLIPLDPLHRAQALELALLVACDIHPLNNVRVLKYLTQVLGIDAEDRQRWYAHWVAEGLAAAET
LLNRHRRGAFFAGTAAGIVECCLVPQLANARRMGCVLAPYPALLELEGRCLALEAFQRASPERQPDYLPD*
AnnotationID:3669GeneID:3661
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 17:05:28
Gene Name:
Confidence Code:3
GeneProduct:probable glutathione S-transferase
Cell Localization:()
Synonyms:PA2473
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7325




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24467




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3661
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5861
                           PA2473_tr
                           translation of PA2473
                           214
                           98.59
                           99.06
                           0
                           1092.0
     

     
     
163997
                           gb|AAG05861.1|AE004675_2
                           (AE004675) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
                           214
                           98.59
                           99.06
                           0
                           1092.0
     

     
     
164001
                           emb|CAD14787.1|
                           (AL646062) PUTATIVE GST-RELATED PROTEIN [Ralstonia solanacearum]
                           216
                           55.09
                           65.74
                           5
                           575.0
     

     
     
163998
                           gb|AAL21080.1|
                           (AE008797) putative glutathione S-transferase [Salmonella typhimurium LT2]
                           214
                           54.20
                           69.62
                           0
                           606.0
     

     
     
163999
                           gb|AAO68377.1|
                           (AE016836) glutathione-S-transferase-family protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           214
                           54.20
                           69.62
                           0
                           606.0
     

     






      

          
GC ORFID: 46663How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2473Glimmer Score: 

          
Start: 2117772Stop: 2118416

          
Length: 645


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2473 translation of PA2473Homolog Bit Score 425.0

          
Other Homologs:  t_PA2007 (ORF: BLASTX 166.0), t_PA2473 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCTCTACAGCTTCTTCAACAGCTCCACGTCCTATCGGGTGCGTATCGCATTGGCCCTGAAAGGTCTG 
GATTACCAGGTAGTGCCGGTCAACCTGCGGCAGGGCGAGCAACTGCGCCCGGCCGACCGCCAGCGCAACCCG 
CTGGGCGCGCTGCCGACCCTGGTCGACGCCGACGGCCGTCGGTTCAGCCAGTCGCTGGCGATCATCGACTAC 
CTCGACGCCGTGCAGCCCGAACCGCGCCTGATCCCTCTCGACCCACTGCATCGCGCCCAGGCGCTGGAACTG 
GCCCTGCTGGTGGCCTGCGACATCCATCCGCTGAACAACGTGCGGGTGCTCAAGTACCTGACCCAGGTCCTC 
GGCATAGACGCCGAGGACCGCCAGCGCTGGTACGCGCACTGGGTCGCCGAGGGCCTGGCGGCGGCGGAGACC 
CTGCTGAACCGACACCGTCGCGGCGCCTTCTTCGCCGGCACCGCAGCGGGCATCGTCGAGTGCTGCCTGGTG 
CCGCAACTGGCCAACGCCCGGCGCATGGGCTGTGTCCTGGCGCCCTACCCGGCGTTGCTCGAACTGGAGGGG 
CGCTGCCTGGCGCTCGAAGCCTTCCAGCGCGCCAGCCCCGAGCGCCAGCCCGACTACCTCCCGGACTGA