ViewGene
Locus Name:
GeneID:
Location:

GeneID:3660
TrivialName: PA14_40380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40380
PAO1 Ortholog Locus:PA1864
Sequence Length:651
Protein Length:216
Start: 3609235
Stop: 3609885
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05253.1|AE004612_7 (AE004612) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 214/216 (99%), Positives = 215/216 (99%)
Sequence:
ATGAAGAAGATCCGCCAACGCAACCTGCAACTGATCCTCGACGCCGCCTGCGAAGTCTTCGCCGACTGCGGC
TTCAGCGCCGCCCGGCTCAGCGACGTCGCCGAGCGCGCCGGCGTGGCGAAGGCCAACGTGCTCTATTACTAC
CGCTCCAAGGCGCAACTCTACGAGGCGGTGCTGGACAGCATCGTCGAGCCTCTGCTGGAAGCCTCCCGGCCA
TTCGCCGGTGACCAGCCGCCCGCCGAGGCGCTACGCGCCTACGTCGACAACAAGATGCGCATCGGCGCCGAG
CGGCCGCACGCGGCCAGGGTCTTCTCCTGCGAGATCATGCGCGGCGCGCCGCGCATGCCGGCGGCGCTGCTG
GAACGCCTCGACGCCCAGGCGGAACGCAACGCCGAGCGCATCCGCCAGTGGATCGACGAAGGCCTGCTGGCG
CCGCTGGATCCGTACCACCTGCTGCTCAACCTGTGGGCGATGACCGAGTCCTATGCCCTTGGCGGCTGGCAA
CTGGCGCGCCTCACCGGCCAGGCCGGGCTGGACGCGAGCGACTACCGGCAGGCGGCGGAAAACATCGTCCGC
CTGGTCTGCGCCGGCTGCCTGGCACTCCCCGGCGAGGCCGCGCCGCGTCGGCGTTTCCGCGCGCTGGCCGGC
TGA
Translation:
MKKIRQRNLQLILDAACEVFADCGFSAARLSDVAERAGVAKANVLYYYRSKAQLYEAVLDSIVEPLLEASRP
FAGDQPPAEALRAYVDNKMRIGAERPHAARVFSCEIMRGAPRMPAALLERLDAQAERNAERIRQWIDEGLLA
PLDPYHLLLNLWAMTESYALGGWQLARLTGQAGLDASDYRQAAENIVRLVCAGCLALPGEAAPRRRFRALAG
*
AnnotationID:3668GeneID:3660
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 07:07:36
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, TetR family
Cell Localization:()
Synonyms:PA1864
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57167.1| (AE016869) transcriptional regulator, TetR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 202

 Score =  205 bits (522), Expect = 1e-52
 Identities = 100/198 (50%), Positives = 137/198 (69%)

>gb|AAN69875.1|AE016626_10 (AE016790) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 203

 Score =  201 bits (511), Expect = 3e-51
 Identities = 97/198 (48%), Positives = 138/198 (69%)








 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family. 
CD-Length = 47 residues, 100.0% aligned
Score = 53.8 bits (130), Expect = 2e-08
Identities = 19/47 (40%), Positives = 32/47 (68%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7323




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24465




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37045




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3660_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3660
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5859
                           PA1864_tr
                           translation of PA1864
                           216
                           99.07
                           99.53
                           0
                           1093.0
     

     
     
163993
                           gb|AAG05253.1|AE004612_7
                           (AE004612) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           216
                           99.07
                           99.53
                           0
                           1093.0
     

     
     
5860
                           PA1504_tr
                           translation of PA1504
                           218
                           50.45
                           66.51
                           4
                           536.0
     

     
     
163994
                           gb|AAG04893.1|AE004579_5
                           (AE004579) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           218
                           50.45
                           66.51
                           4
                           536.0
     

     
     
163995
                           gb|AAO57167.1|
                           (AE016869) transcriptional regulator, TetR family [Pseudomonas syringae pv. tomato str. DC3000]
                           216
                           47.22
                           64.35
                           14
                           518.0
     

     






      

          
GC ORFID: 46662How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1864Glimmer Score: 

          
Start: 1344675Stop: 1344025

          
Length: 651


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1864 translation of PA1864Homolog Bit Score 425.0

          
Other Homologs:  t_PA1504 (ORF: BLASTX 211.0), psyr_15may02_Scaffold1_revised_gene617 (ORF: BLASTX 206.0), t_PA1864 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGAAGATCCGCCAACGCAACCTGCAACTGATCCTCGACGCCGCCTGCGAAGTCTTCGCCGACTGCGGC 
TTCAGCGCCGCCCGGCTCAGCGACGTCGCCGAGCGCGCCGGCGTGGCGAAGGCCAACGTGCTCTATTACTAC 
CGCTCCAAGGCGCAACTCTACGAGGCGGTGCTGGACAGCATCGTCGAGCCTCTGCTGGAAGCCTCCCGGCCA 
TTCGCCGGTGACCAGCCGCCCGCCGAGGCGCTACGCGCCTACGTCGACAACAAGATGCGCATCGGCGCCGAG 
CGGCCGCACGCGGCCAGGGTCTTCTCCTGCGAGATCATGCGCGGCGCGCCGCGCATGCCGGCGGCGCTGCTG 
GAACGCCTCGACGCCCAGGCGGAACGCAACGCCGAGCGCATCCGCCAGTGGATCGACGAAGGCCTGCTGGCG 
CCGCTGGATCCGTACCACCTGCTGCTCAACCTGTGGGCGATGACCGAGTCCTATGCCCTTGGCGGCTGGCAA 
CTGGCGCGCCTCACCGGCCAGGCCGGGCTGGACGCGAGCGACTACCGGCAGGCGGCGGAAAACATCGTCCGC 
CTGGTCTGCGCCGGCTGCCTGGCACTCCCCGGCGAGGCCGCGCCGCGTCGGCGTTTCCGCGCGCTGGCCGGC 
TGA