ViewGene
Locus Name:
GeneID:
Location:

GeneID:366
TrivialName: PA14_72110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72110
PAO1 Ortholog Locus:PA5464
Sequence Length:1959
Protein Length:652
Start: 6425635
Stop: 6427593
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08849.1|AE004959_5 (AE004959) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 648/652 (99%), Positives = 649/652 (99%)
Sequence:
GTGAGGAAGGCCTGCGCCTGGCTGCTGGCGCTGGCCCTCTGCGGAGCCGGCAACGCGACGGCGGCCCTGCGC
CTGAAACTCGACGCGCCTGAGCTGGACCCTGCGCAGCGCGAGGCCAGCCAGCAACTCTTGGACGAAGCCGCG
GACAAGCTGCCGCCGGCCTTCCACGAACGCCTGGACCGCGAGATCGAGGTCGAGTGGCGCGACGACCTGCCC
GCCAACGGCATGGGCCAGGCCCGTGGTCCGCAGCGCATCGCGCTGAACCGCAAGTACCTGTCCGATCTTACC
GACGGCAGCGCCGCCAGCCGCCAGACCGGGCGCGTGCACGGCACCGAGCGGCGCGAGCTGCTGGCGACCCTG
CTGCACGAGCTGACCCACGTCTACGATCGCGCGCGCCTGTGGTCGGCGGAGGAAAAACGCGAGATCCGCCGC
TGCACGCGCCAGGAAGAAACCCTCGGCCGGATCGCCCAGCCCACCGATTGCCGCGGGCAGAGCGGGCGCCGC
TTCACGCTCTCCGACGACCCGCGCCTGCTCGATCTCGCCGGCTGGCCGCAGCGCGCCGGCCAGCGCGGGCGG
CGCGAGGCGCACAATGGCTTCGTACTGCGCAGCCCGGACGTCTACGAGCTGAGCAATCCGCGCGAGTTCGTC
GCGGTGAACATGGAGTACTTCCTCCTCGATCCCAGCTACGCCTGCCGCCGCCCGGCGCTCTACCGCTACTAC
CAGCAACGCTTCGGCTGGGCGCCGGAACACAGTGCCTGTGCGCAGAGTTTCGCCTACCTCAACGCCGGCCGC
GACTTCGGCCAGCAGCCGCTGGGCCAGCTCGACCCCGAGCGGGTCTACGAGGTCGACTACCTGCTGGCCGAG
GCCAACGACAACCTGGTCAGCCGCTGGGGCCACACCATGCTCCGCCTGGTGATCTGCGCCCCCGGCCGGCCG
CGTGGGCCGGACTGCCGGCTGGACCTCGACCAGCATCTGGTGCTGTCCTACCGCGCCTTCGTCGGCGACCTG
CAATTGTCCAGCTGGGACGGCCTGACCGGCGCCTATCCGTCGCGCCTGTTCGTCCTGCCGCTGTCGCAGGTG
ATCGAGGAATACACCAAGGTCGAGCTGCGCAGCCTCGCCTCGGTGCCGCTGAAGCTGGACCGCGAGGAGGTC
GCCAGCCTGGTCGAGCGCGCCGCGCAGAGTCACTGGAGCTACGACGGCCAGTACTACTTCATCTCCAACAAT
TGCGCGGTGGAAACCCTCAAGCTGCTGCGCAGCGGCATCCCCCGGCGACCGCTGCAAAGCCTGGACAGCATC
ACCCCCTACGGCGTGCTCGAGATGCTGGAGAACCGCAAGCTGGCCGATCCCAGTGTGCTCGACGACCCCAAG
GAAGCCCTGCGCCTGGGCTACCGCTTCGACTCCTTCCGCGACCGCTACCAGGCGATGTTCGACGTGCTCAAG
CAGCGCCTGCACATTCCCCAGGACAAGGTCGAGGACTGGCTGGCGCTGCCGGCCAGGGAGCGCCAACCCTGG
TTCGCCAAGGCCGACCTGCGCGCCAGCGCGGCGCTGCTGCTGCTCGAGCAGGCCTCGCTGCGGCGCCAGCTG
CTGCTCGCCCAGGACGAGTTGAAGCGCCTGTACCTCGGCCACCTGGACAAGCCGGCCGGCGACCAGCGCCTG
GAAGTGGCCGGCAAGACCTTCCAGCAGATCCTCGACGACAGCGGCTTCCTCAGTCGTCCGGCGGAACTCCTG
GAGGGCGGCTACGGCCTGCCGCAGGCCGCCGAGTGGAAGCACCTGGAAGAGCAGACCCGCGAACGCCAGGCG
CGCCTGCGCCGGCTCAGCGACGACCTCGACCGCGAGGTCCGCGCCCTGCTCGATCCCGAGCGCCGCGCCGAG
CTGGAAGCCAACGAGGCCAACATCAAGGAGGTCGGCGCGCACCTGCGCGAGCTGCACAAGGCGGCCGGCGGG
CTGATGCTGCCCTGA
Translation:
MRKACAWLLALALCGAGNATAALRLKLDAPELDPAQREASQQLLDEAADKLPPAFHERLDREIEVEWRDDLP
ANGMGQARGPQRIALNRKYLSDLTDGSAASRQTGRVHGTERRELLATLLHELTHVYDRARLWSAEEKREIRR
CTRQEETLGRIAQPTDCRGQSGRRFTLSDDPRLLDLAGWPQRAGQRGRREAHNGFVLRSPDVYELSNPREFV
AVNMEYFLLDPSYACRRPALYRYYQQRFGWAPEHSACAQSFAYLNAGRDFGQQPLGQLDPERVYEVDYLLAE
ANDNLVSRWGHTMLRLVICAPGRPRGPDCRLDLDQHLVLSYRAFVGDLQLSSWDGLTGAYPSRLFVLPLSQV
IEEYTKVELRSLASVPLKLDREEVASLVERAAQSHWSYDGQYYFISNNCAVETLKLLRSGIPRRPLQSLDSI
TPYGVLEMLENRKLADPSVLDDPKEALRLGYRFDSFRDRYQAMFDVLKQRLHIPQDKVEDWLALPARERQPW
FAKADLRASAALLLLEQASLRRQLLLAQDELKRLYLGHLDKPAGDQRLEVAGKTFQQILDDSGFLSRPAELL
EGGYGLPQAAEWKHLEEQTRERQARLRRLSDDLDREVRALLDPERRAELEANEANIKEVGAHLRELHKAAGG
LMLP*
AnnotationID:375GeneID:366
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 05:05:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5464
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:14119




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17877




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:366
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
611
                           PA5464_tr
                           translation of PA5464
                           652
                           99.38
                           99.53
                           0
                           3369.0
     

     
     
28943
                           gb|AAG08849.1|AE004959_5
                           (AE004959) hypothetical protein PA5464 [Pseudomonas aeruginosa PAO1]
                           652
                           99.23
                           99.53
                           0
                           3366.0
     

     
     
28944
                           gb|AAO58888.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           655
                           68.24
                           78.62
                           5
                           2282.0
     

     
     
28945
                           gb|AAN65783.1|AE016204_6
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           661
                           65.65
                           78.06
                           19
                           2226.0
     

     
     
28946
                           gb|AAM41117.1|
                           (AE012285) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           669
                           46.78
                           58.59
                           65
                           1356.0
     

     






      

          
GC ORFID: 43368How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5464Glimmer Score: 

          
Start: 5689324Stop: 5691282

          
Length: 1959


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5464 translation of PA5464Homolog Bit Score 1302.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2892 (ORF: BLASTX 897.0), t_PA5464 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGGAAGGCCTGCGCCTGGCTGCTGGCGCTGGCCCTCTGCGGAGCCGGCAACGCGACGGCGGCCCTGCGC 
CTGAAACTCGACGCGCCTGAGCTGGACCCTGCGCAGCGCGAGGCCAGCCAGCAACTCTTGGACGAAGCCGCG 
GACAAGCTGCCGCCGGCCTTCCACGAACGCCTGGACCGCGAGATCGAGGTCGAGTGGCGCGACGACCTGCCC 
GCCAACGGCATGGGCCAGGCCCGTGGTCCGCAGCGCATCGCGCTGAACCGCAAGTACCTGTCCGATCTTACC 
GACGGCAGCGCCGCCAGCCGCCAGACCGGGCGCGTGCACGGCACCGAGCGGCGCGAGCTGCTGGCGACCCTG 
CTGCACGAGCTGACCCACGTCTACGATCGCGCGCGCCTGTGGTCGGCGGAGGAAAAACGCGAGATCCGCCGC 
TGCACGCGCCAGGAAGAAACCCTCGGCCGGATCGCCCAGCCCACCGATTGCCGCGGGCAGAGCGGGCGCCGC 
TTCACGCTCTCCGACGACCCGCGCCTGCTCGATCTCGCCGGCTGGCCGCAGCGCGCCGGCCAGCGCGGGCGG 
CGCGAGGCGCACAATGGCTTCGTACTGCGCAGCCCGGACGTCTACGAGCTGAGCAATCCGCGCGAGTTCGTC 
GCGGTGAACATGGAGTACTTCCTCCTCGATCCCAGCTACGCCTGCCGCCGCCCGGCGCTCTACCGCTACTAC 
CAGCAACGCTTCGGCTGGGCGCCGGAACACAGTGCCTGTGCGCAGAGTTTCGCCTACCTCAACGCCGGCCGC 
GACTTCGGCCAGCAGCCGCTGGGCCAGCTCGACCCCGAGCGGGTCTACGAGGTCGACTACCTGCTGGCCGAG 
GCCAACGACAACCTGGTCAGCCGCTGGGGCCACACCATGCTCCGCCTGGTGATCTGCGCCCCCGGCCGGCCG 
CGTGGGCCGGACTGCCGGCTGGACCTCGACCAGCATCTGGTGCTGTCCTACCGCGCCTTCGTCGGCGACCTG 
CAATTGTCCAGCTGGGACGGCCTGACCGGCGCCTATCCGTCGCGCCTGTTCGTCCTGCCGCTGTCGCAGGTG 
ATCGAGGAATACACCAAGGTCGAGCTGCGCAGCCTCGCCTCGGTGCCGCTGAAGCTGGACCGCGAGGAGGTC 
GCCAGCCTGGTCGAGCGCGCCGCGCAGAGTCACTGGAGCTACGACGGCCAGTACTACTTCATCTCCAACAAT 
TGCGCGGTGGAAACCCTCAAGCTGCTGCGCAGCGGCATCCCCCGGCGACCGCTGCAAAGCCTGGACAGCATC 
ACCCCCTACGGCGTGCTCGAGATGCTGGAGAACCGCAAGCTGGCCGATCCCAGTGTGCTCGACGACCCCAAG 
GAAGCCCTGCGCCTGGGCTACCGCTTCGACTCCTTCCGCGACCGCTACCAGGCGATGTTCGACGTGCTCAAG 
CAGCGCCTGCACATTCCCCAGGACAAGGTCGAGGACTGGCTGGCGCTGCCGGCCAGGGAGCGCCAACCCTGG 
TTCGCCAAGGCCGACCTGCGCGCCAGCGCGGCGCTGCTGCTGCTCGAGCAGGCCTCGCTGCGGCGCCAGCTG 
CTGCTCGCCCAGGACGAGTTGAAGCGCCTGTACCTCGGCCACCTGGACAAGCCGGCCGGCGACCAGCGCCTG 
GAAGTGGCCGGCAAGACCTTCCAGCAGATCCTCGACGACAGCGGCTTCCTCAGTCGTCCGGCGGAACTCCTG 
GAGGGCGGCTACGGCCTGCCGCAGGCCGCCGAGTGGAAGCACCTGGAAGAGCAGACCCGCGAACGCCAGGCG 
CGCCTGCGCCGGCTCAGCGACGACCTCGACCGCGAGGTCCGCGCCCTGCTCGATCCCGAGCGCCGCGCCGAG 
CTGGAAGCCAACGAGGCCAACATCAAGGAGGTCGGCGCGCACCTGCGCGAGCTGCACAAGGCGGCCGGCGGG 
CTGATGCTGCCCTGA