ViewGene

Locus Name:
GeneID:
Location:

GeneID:3659
TrivialName: PA14_08370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08370
PAO1 Ortholog Locus:PA0652
Sequence Length:645
Protein Length:214
Start: 717656
Stop: 717012
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04041.1|AE004500_7 (AE004500) transcriptional regulator Vfr [Pseudomonas aeruginosa PAO1]
Identities = 214/214 (100%), Positives = 214/214 (100%)
Sequence:
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGC
TACACCGCAAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCG
GTCACCATCCTCATCGAGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTC
GGCGAGCTGGGATTGTTCGAAAAGGAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGTGCCAAGGTGGAA
TGCGAAGTCGCCGAGATCAGCTATGCGAAGTTCCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACC
CTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCCGCAAGGTGGGCGACCTGGCCTTCCTCGACGTC
ACCGGACGCGTCGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGACGCCATGACCCACCCGGACGGCATG
CAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAATGGTCGGACGCGTGCTG
AAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCCGCTGA
Translation:
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF
GELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDV
TGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR*
AnnotationID:3667GeneID:3659
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 14:02:58
Gene Name:vfr
Confidence Code:1
GeneProduct:cyclic AMP receptor-like protein
Cell Localization:()
Synonyms:cpr
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0664
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66054.1|AE016234_7 (AE016775) catabolite gene activator Crp [Pseudomonas putida
           KT2440]
          Length = 214

 Score =  343 bits (879), Expect = 5e-94
 Identities = 175/214 (81%), Positives = 184/214 (85%)

>gb|AAK14380.1|AF334764_2 (AF334764) cyclic AMP receptor protein [Vibrio parahaemolyticus]
          Length = 210

 Score =  277 bits (708), Expect = 4e-74
 Identities = 134/202 (66%), Positives = 171/202 (84%), Gaps = 3/202 (1%)

>gb|AAM87500.1|AE014000_4 (AE014000) cyclic AMP receptor protein [Yersinia pestis KIM]
          Length = 210

 Score =  276 bits (705), Expect = 8e-74
 Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 3/202 (1%)

Structural Features:
COG0664, Crp, cAMP-binding proteins - catabolite gene activator and 
regulatory subunit of cAMP-dependent protein kinases 
[Signal transduction mechanisms]
CD-Length = 214 residues,  93.5% aligned
Score =  138 bits (348), Expect = 5e-34
Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 5/204 (2%)

Genomic Context:
Comment:
ReferenceID:7321
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24463
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34611
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3659_cdd.html
URL:
ReferenceID:35250
Author/Investigator(s): West SE, Sample AK, Runyen-Janecky LJ.
Title: The vfr gene product, required for Pseudomonas aeruginosa exotoxin A and protease production, belongs to the cyclic AMP receptor protein family.
PubMed: 8002577
MedLine:
Source:
J Bacteriol. 1994 Dec;176(24):7532-42.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8002577
Homologs By Global Alignment
Gene ID:3659

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5858 PA0652_tr translation of PA0652 214 99.99 99.99 0 1096.0
163941 gb|AAG04041.1|AE004500_7 (AE004500) transcriptional regulator Vfr [Pseudomonas aeruginosa PAO1] 214 99.99 99.99 0 1096.0
163942 gb|AAA73464.1| (U16318) cyclic AMP receptor-like protein [Pseudomonas aeruginosa] 214 99.99 99.99 0 1096.0
163943 gb|AAN66054.1|AE016234_7 (AE016775) catabolite gene activator Crp [Pseudomonas putida KT2440] 214 81.77 85.98 0 879.0
163944 gb|AAO54138.1| (AE016858) catabolite gene activator Crp [Pseudomonas syringae pv. tomato str. DC3000] 214 78.97 87.85 0 865.0
GC ORFID: 46661How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0652Glimmer Score:
Start: 6518999Stop: 6518355
Length: 645
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0652 translation of PA0652Homolog Bit Score 426.0
Other Homologs: psyr_15may02_Scaffold14_revised_gene2401 (ORF: BLASTX 340.0), t_PA0652 (ORF: GLIMMER)
GC ORF Sequence
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGC
TACACCGCAAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCG
GTCACCATCCTCATCGAGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTC
GGCGAGCTGGGATTGTTCGAAAAGGAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGTGCCAAGGTGGAA
TGCGAAGTCGCCGAGATCAGCTATGCGAAGTTCCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACC
CTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCCGCAAGGTGGGCGACCTGGCCTTCCTCGACGTC
ACCGGACGCGTCGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGACGCCATGACCCACCCGGACGGCATG
CAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAATGGTCGGACGCGTGCTG
AAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCCGCTGA