ViewGene

Locus Name:
GeneID:
Location:

GeneID:3658
TrivialName: PA14_73360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73360
PAO1 Ortholog Locus:PA5564
Sequence Length:645
Protein Length:214
Start: 6530561
Stop: 6529917
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08949.1|AE004968_3 (AE004968) glucose inhibited division protein B [Pseudomonas aeruginosa PAO1]
Identities = 213/214 (99%), Positives = 213/214 (99%)
Sequence:
ATGTCTGCGGTAACCCAACACCACGCCGACGAACTCGCGCGCGGTGCTGACGAGCTAGGCGTCGCCCTCGAC
GCCGACAAGCAACGCCAGCTGCTGGCCTACTTGGCCCTGCTGATCAAATGGAACAAGGCCTACAACCTGACC
GCCGTACGCGACCCGGACGAGATGGTTTCGCGCCACCTGCTCGACAGCCTGAGCATCGTGCCTTATGCCGAG
GCTGGGGATAACTGGCTGGATGTCGGCAGCGGCGGCGGCATGCCCGGCGTGCCGCTGGCCATCCTGTTCCCG
GAAAAGCGCCTGACCCTGCTCGACAGCAACGGCAAGAAAACCCGCTTCCTGACCCAGGTGAAGCTCGAGCTG
AAGCTGGCCAACCTCGAAGTCGTGCACAGCCGGGTGGAAGCCTTCCGTCCCGAGAGCCCCTTCGATGGCATC
GTTTCCCGCGCTTTCAGCAGCCTGGAGGACTTCGCCAACTGGACCCGCCACCTCGGTGGCCAGGAAACCCGC
TGGCTGGCGATGAAGGGCGTGCATCCGAACGAAGAGCTGGCGGCACTCCCGGAGGATTTCCGGGTCGAAGCC
GAGCACGCGCTGGCGGTACCCGGTTGCCAAGGTCAGCGGCATCTGCTGATACTGCGGTGCACAGCATGA
Translation:
MSAVTQHHADELARGADELGVALDADKQRQLLAYLALLIKWNKAYNLTAVRDPDEMVSRHLLDSLSIVPYAE
AGDNWLDVGSGGGMPGVPLAILFPEKRLTLLDSNGKKTRFLTQVKLELKLANLEVVHSRVEAFRPESPFDGI
VSRAFSSLEDFANWTRHLGGQETRWLAMKGVHPNEELAALPEDFRVEAEHALAVPGCQGQRHLLILRCTA*
AnnotationID:3666GeneID:3658
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 08:08:21
Gene Name:gidB
Confidence Code:2
GeneProduct:glucose inhibited division protein B
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:S-adenosylmethionine-dependent methyltransferase
Functional Category Confidence Code:5
COGs:COG0357,pfam02527
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO59022.1| (AE016876) glucose-inhibited division protein B [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 211

 Score =  320 bits (820), Expect = 4e-87
 Identities = 155/211 (73%), Positives = 178/211 (84%), Gaps = 1/211 (0%)

>gb|AAN65637.1|AE016190_3 (AE016774) glucose-inhibited division protein B [Pseudomonas putida
           KT2440]
          Length = 216

 Score =  320 bits (820), Expect = 4e-87
 Identities = 156/211 (73%), Positives = 179/211 (84%), Gaps = 1/211 (0%)

>gb|AAA62092.1| (L10328) glucose inhibited division protein [Escherichia coli]
          Length = 207

 Score =  217 bits (552), Expect = 4e-56
 Identities = 101/194 (52%), Positives = 146/194 (75%), Gaps = 1/194 (0%)
Structural Features:
COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved 
in bacterial cell division 
[Cell envelope biogenesis, outer membrane] 
CD-Length = 215 residues,  99.5% aligned
Score =  223 bits (569), Expect = 1e-59
Identities = 95/214 (44%), Positives = 128/214 (59%), Gaps = 7/214 (3%)

pfam02527, GidB, Glucose inhibited division protein. 
CD-Length = 184 residues,  99.5% aligned
Score =  210 bits (537), Expect = 9e-56
Identities = 77/183 (42%), Positives = 111/183 (60%), Gaps = 2/183 (1%)
Genomic Context:
Comment:
ReferenceID:7319
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24461
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33347
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3658_cdd.html
URL:
ReferenceID:35547
Author/Investigator(s): Fsihi H, De Rossi E, Salazar L, Cantoni R, Labo M, Riccardi G, Takiff HE, Eiglmeier K, Bergh S, Cole ST.
Title: Gene arrangement and organization in a approximately 76 kb fragment encompassing the oriC region of the chromosome of Mycobacterium leprae.
PubMed: 8969512
MedLine:
Source:
Microbiology. 1996 Nov;142 ( Pt 11):3147-61.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8969512
ReferenceID:35563
Author/Investigator(s): Nardmann J, Messer W.
Title: Identification and characterization of the dnaA upstream region of Thermus thermophilus.
PubMed: 11167017
MedLine:
Source:
Gene. 2000 Dec 31;261(2):299-303.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11167017
Homologs By Global Alignment
Gene ID:3658

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5857 PA5564_tr translation of PA5564 214 99.53 99.53 0 1095.0
163901 gb|AAG08949.1|AE004968_3 (AE004968) glucose inhibited division protein B [Pseudomonas aeruginosa PAO1] 214 99.53 99.53 0 1095.0
163903 gb|AAN65637.1|AE016190_3 (AE016774) glucose-inhibited division protein B [Pseudomonas putida KT2440] 216 72.68 83.33 2 821.0
163904 emb|CAA44420.1| (X62540) unnamed protein product [Pseudomonas putida] 216 72.68 83.33 2 821.0
163902 gb|AAO59022.1| (AE016876) glucose-inhibited division protein B [Pseudomonas syringae pv. tomato str. DC3000] 214 72.42 83.17 3 821.0
GC ORFID: 46660How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5564Glimmer Score:
Start: 5794250Stop: 5793606
Length: 645
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5564 translation of PA5564Homolog Bit Score 426.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene4122 (ORF: BLASTX 325.0), t_PA5564 (ORF: GLIMMER)
GC ORF Sequence
ATGTCTGCGGTAACCCAACACCACGCCGACGAACTCGCGCGCGGTGCTGACGAGCTAGGCGTCGCCCTCGAC
GCCGACAAGCAACGCCAGCTGCTGGCCTACTTGGCCCTGCTGATCAAATGGAACAAGGCCTACAACCTGACC
GCCGTACGCGACCCGGACGAGATGGTTTCGCGCCACCTGCTCGACAGCCTGAGCATCGTGCCTTATGCCGAG
GCTGGGGATAACTGGCTGGATGTCGGCAGCGGCGGCGGCATGCCCGGCGTGCCGCTGGCCATCCTGTTCCCG
GAAAAGCGCCTGACCCTGCTCGACAGCAACGGCAAGAAAACCCGCTTCCTGACCCAGGTGAAGCTCGAGCTG
AAGCTGGCCAACCTCGAAGTCGTGCACAGCCGGGTGGAAGCCTTCCGTCCCGAGAGCCCCTTCGATGGCATC
GTTTCCCGCGCTTTCAGCAGCCTGGAGGACTTCGCCAACTGGACCCGCCACCTCGGTGGCCAGGAAACCCGC
TGGCTGGCGATGAAGGGCGTGCATCCGAACGAAGAGCTGGCGGCACTCCCGGAGGATTTCCGGGTCGAAGCC
GAGCACGCGCTGGCGGTACCCGGTTGCCAAGGTCAGCGGCATCTGCTGATACTGCGGTGCACAGCATGA