ViewGene

Locus Name:
GeneID:
Location:

GeneID:3657
TrivialName: PA14_40070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40070
PAO1 Ortholog Locus:PA1890
Sequence Length:624
Protein Length:207
Start: 3571228
Stop: 3571851
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05279.1|AE004615_2 (AE004615) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
Identities = 207/207 (100%), Positives = 207/207 (100%)
Sequence:
ATGCTGGAGATTCTCGGAAAGGCCTCTTCGATCAACGTGCGCAAGGTGCTCTGGACCTGCGCCGAACTGGAC
CTGCCCTACCGCCGCGAAGACTGGGGCAGCGGCTTCCGCGACACCCACGCGGCGGAGTTCCTCGCCCTCAAC
CCGAACGCCATGGTGCCGGTGCTGCGCGACGGCGAACTGGTGCTCTGGGAATCCAACAGCATCATCCGCTAC
CTGGCCAACCGCTATGCCGGCGAACGCCTCTATCCGCAGCAGGCGGCGCCGCGCGCGCGGGTCGACCAGTGG
CTGGACTGGCAGGCCTCCGACCTCAACCGCTCGTGGAGCTATGCCTTCATGAGCCTGGTCCGGCAGTCGCCG
GCGCACCGCGACGCGGCCCAGGTGGAGGCTTCGTTGCGCGGCTGGACGGGCTTCATGGAAATCCTCGAGGGA
CAACTGCTACGCACCGGCGCCTATGTCGCCGGCGAGACCTTCAGCCTGGCCGACATCGCCATCGGCCTGTCG
GTCAACCGCTGGTACGAGACGCCGTTCGAGCATCCGTCGCTGCCAGCGGTGCGCGCCTATTACGAGCGCCTC
GGCGCCCGTCCCGGCTTCCTCGCCCACGGCCGCAACGGCGTACCCTGA
Translation:
MLEILGKASSINVRKVLWTCAELDLPYRREDWGSGFRDTHAAEFLALNPNAMVPVLRDGELVLWESNSIIRY
LANRYAGERLYPQQAAPRARVDQWLDWQASDLNRSWSYAFMSLVRQSPAHRDAAQVEASLRGWTGFMEILEG
QLLRTGAYVAGETFSLADIAIGLSVNRWYETPFEHPSLPAVRAYYERLGARPGFLAHGRNGVP*
AnnotationID:3665GeneID:3657
AnnotatorUID: danlee
Modification Date/Time: 2005-10-14 14:02:06
Gene Name:
Confidence Code:3
GeneProduct:putative glutathione S-transferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0625
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:2.5.1.18
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68145.1|AE016446_5 (AE016783) glutathione S-transferase family protein [Pseudomonas
           putida KT2440]
          Length = 207

 Score =  306 bits (785), Expect = 4e-83
 Identities = 142/207 (68%), Positives = 164/207 (79%)

>gb|AAO58207.1| (AE016873) glutathione S-transferase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 207

 Score =  295 bits (755), Expect = 1e-79
 Identities = 140/207 (67%), Positives = 159/207 (76%)

>gb|AAM39182.1| (AE012089) glutathione S-transferase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 206

 Score =  224 bits (572), Expect = 2e-58
 Identities = 113/202 (55%), Positives = 133/202 (65%)

Structural Features:
COG0625, Gst, Glutathione S-transferase 
[Posttranslational modification, protein turnover, chaperones] 
CD-Length = 211 residues,  96.7% aligned
Score =  117 bits (294), Expect = 9e-28
Identities = 71/207 (34%), Positives = 98/207 (47%), Gaps = 7/207 (3%)
Genomic Context:
Comment:
ReferenceID:7317
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24459
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37041
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3657_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3657

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5855 PA1890_tr translation of PA1890 207 99.99 99.99 0 1096.0
163888 gb|AAG05279.1|AE004615_2 (AE004615) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1] 207 99.99 99.99 0 1096.0
163889 gb|AAN68145.1|AE016446_5 (AE016783) glutathione S-transferase family protein [Pseudomonas putida KT2440] 207 68.59 79.22 0 785.0
163890 gb|AAO58207.1| (AE016873) glutathione S-transferase family protein [Pseudomonas syringae pv. tomato str. DC3000] 207 67.63 76.81 0 755.0
163891 gb|AAQ57873.1| (AE016910) probable glutathione transferase [Chromobacterium violaceum ATCC 12472] 207 54.58 68.11 2 584.0
GC ORFID: 46659How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1890Glimmer Score:
Start: 1382682Stop: 1382059
Length: 624
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1890 translation of PA1890Homolog Bit Score 426.0
Other Homologs: psyr_15may02_Scaffold11_revised_gene1853 (ORF: BLASTX 295.0), t_PA2813 (ORF: BLASTX 153.0), t_PA1890 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGGAGATTCTCGGAAAGGCCTCTTCGATCAACGTGCGCAAGGTGCTCTGGACCTGCGCCGAACTGGAC
CTGCCCTACCGCCGCGAAGACTGGGGCAGCGGCTTCCGCGACACCCACGCGGCGGAGTTCCTCGCCCTCAAC
CCGAACGCCATGGTGCCGGTGCTGCGCGACGGCGAACTGGTGCTCTGGGAATCCAACAGCATCATCCGCTAC
CTGGCCAACCGCTATGCCGGCGAACGCCTCTATCCGCAGCAGGCGGCGCCGCGCGCGCGGGTCGACCAGTGG
CTGGACTGGCAGGCCTCCGACCTCAACCGCTCGTGGAGCTATGCCTTCATGAGCCTGGTCCGGCAGTCGCCG
GCGCACCGCGACGCGGCCCAGGTGGAGGCTTCGTTGCGCGGCTGGACGGGCTTCATGGAAATCCTCGAGGGA
CAACTGCTACGCACCGGCGCCTATGTCGCCGGCGAGACCTTCAGCCTGGCCGACATCGCCATCGGCCTGTCG
GTCAACCGCTGGTACGAGACGCCGTTCGAGCATCCGTCGCTGCCAGCGGTGCGCGCCTATTACGAGCGCCTC
GGCGCCCGTCCCGGCTTCCTCGCCCACGGCCGCAACGGCGTACCCTGA