ViewGene
Locus Name:
GeneID:
Location:

GeneID:3656
TrivialName: PA14_49270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49270
PAO1 Ortholog Locus:PA1172
Sequence Length:597
Protein Length:198
Start: 4376216
Stop: 4376812
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04561.1|AE004547_7 (AE004547) cytochrome c-type protein NapC [Pseudomonas aeruginosa PAO1]
Identities = 198/198 (100%), Positives = 198/198 (100%)
Sequence:
ATGAAAGCACTCATCGCCTGGCTGGCCGGTTACTGGCGGGTCCTGCGTCGTCCCAGCGTGCATTTCAGCCTG
GGCTTCCTCACCCTCGGCGGCTTCATCGCCGGGATCGTCTTCTGGGGCGGCTTCAACACCGCCCTGGAGGCG
ACCAACACCGAGACCTTCTGCATTTCCTGCCACGAGATGCGCGACAACGTGTTCGTCGAACTCAAGGACACC
ATCCACTACAGCAACCGTTCCGGAGTCCGCGCCACCTGTCCCGACTGCCACGTGCCACACAAGTGGACCGAC
AAGATCGCGCGCAAGATGCAGGCCTCCAAGGAGGTCTGGGGCAAGATCTTCGGCACCATCAACACCCGCGAG
AAATTCCTCGATCACCGCCGCGAGCTGGCCGAGCACGAATGGGCACGGCTCAAGGCCAACGATTCGCTGGAA
TGCCGCAACTGCCACAACTTCGAGTTCATGGACTTCACCCGGCAGAGCGTGCGCGCGCGGCAGATGCACTCC
ACCGCCCTGGCCAGCGGCGAAGCCACCTGCATCGACTGCCACAAGGGGATCGCCCACCACCTGCCGGACATG
ACCGGGGTGAAGGGCTGGTAG
Translation:
MKALIAWLAGYWRVLRRPSVHFSLGFLTLGGFIAGIVFWGGFNTALEATNTETFCISCHEMRDNVFVELKDT
IHYSNRSGVRATCPDCHVPHKWTDKIARKMQASKEVWGKIFGTINTREKFLDHRRELAEHEWARLKANDSLE
CRNCHNFEFMDFTRQSVRARQMHSTALASGEATCIDCHKGIAHHLPDMTGVKGW*
AnnotationID:3664GeneID:3656
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 14:02:49
Gene Name:napc
Confidence Code:2
GeneProduct:cytochrome c-type protein NapC
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3005
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Nitrogen metabolism.
Homology:






 
Structural Features:






   
Genomic Context:
Sixth of six ORF cluster: napEFDABC.






   
Comment:


















    ReferenceID:7315




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16970




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:napC_CDS.cgi


    		




 
URL:

















    ReferenceID:24457




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3656
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5854
                           PA1172_tr
                           translation of PA1172
                           198
                           99.99
                           99.99
                           0
                           1094.0
     

     
     
163817
                           gb|AAG04561.1|AE004547_7
                           (AE004547) cytochrome c-type protein NapC [Pseudomonas aeruginosa PAO1]
                           198
                           99.99
                           99.99
                           0
                           1094.0
     

     
     
163819
                           gb|AAL36492.1|
                           (AF245096) membrane-anchored tetraheme c-type cytochrome [Azospirillum brasilense]
                           206
                           71.84
                           81.55
                           8
                           831.0
     

     
     
163823
                           gb|AAP85965.1|
                           (AY305378) periplasmic nitrate reductase transmembrane protein [Ralstonia eutropha]
                           200
                           70.50
                           81.50
                           7
                           796.0
     

     
     
163825
                           gb|AAM47036.1|
                           (AF314590) NapC [Bradyrhizobium japonicum]
                           213
                           68.54
                           74.17
                           15
                           794.0
     

     






      

          
GC ORFID: 46658How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1172Glimmer Score: 

          
Start: 577692Stop: 577096

          
Length: 597


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1172 translation of PA1172Homolog Bit Score 426.0

          
Other Homologs:  t_PA1172 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGCACTCATCGCCTGGCTGGCCGGTTACTGGCGGGTCCTGCGTCGTCCCAGCGTGCATTTCAGCCTG 
GGCTTCCTCACCCTCGGCGGCTTCATCGCCGGGATCGTCTTCTGGGGCGGCTTCAACACCGCCCTGGAGGCG 
ACCAACACCGAGACCTTCTGCATTTCCTGCCACGAGATGCGCGACAACGTGTTCGTCGAACTCAAGGACACC 
ATCCACTACAGCAACCGTTCCGGAGTCCGCGCCACCTGTCCCGACTGCCACGTGCCACACAAGTGGACCGAC 
AAGATCGCGCGCAAGATGCAGGCCTCCAAGGAGGTCTGGGGCAAGATCTTCGGCACCATCAACACCCGCGAG 
AAATTCCTCGATCACCGCCGCGAGCTGGCCGAGCACGAATGGGCACGGCTCAAGGCCAACGATTCGCTGGAA 
TGCCGCAACTGCCACAACTTCGAGTTCATGGACTTCACCCGGCAGAGCGTGCGCGCGCGGCAGATGCACTCC 
ACCGCCCTGGCCAGCGGCGAAGCCACCTGCATCGACTGCCACAAGGGGATCGCCCACCACCTGCCGGACATG 
ACCGGGGTGAAGGGCTGGTAG