ViewGene
Locus Name:
GeneID:
Location:

GeneID:3655
TrivialName: PA14_50610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50610
PAO1 Ortholog Locus:PA1066
Sequence Length:672
Protein Length:223
Start: 4497338
Stop: 4498009
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04455.1|AE004538_7 (AE004538) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 215/217 (99%), Positives = 216/217 (99%)
Sequence:
TTGACAGGATTATCCACAGCAAAGGCGACTCTACACTGGAAACCACTCACCTTCACGCAACGAGAGGCCTGT
ATGAAAATCATCCTGATCGGCGCCAGCGGCACCCTTGGCAAGGGCATCGACAAAGAACTCGGCGAGCGCCAC
GAGATCGTCCGGGTAGGCCACAGCAGCGGCGATTTCCAGGTCGACATCAGCGACGCGGACTCCATTCGCGCC
CTGTTCGAGAAGACCGGTCGCTTCGACGCGCTGGTCGCCGCGGTCGGCAAGGTGCACTTCGGCGCCCTGGAG
GAAATGGGCGAGGCGCAATACCAGCTCGGCCTGCGCGACAAGCTGATGGGCCAGGTCAACCTGGTACTGCTC
GGCCGCGAGTACGCCAACGACGGGGGCTCCTTCACCCTCACCAGCGGCGTGCTCGCCGAGCAGCCGATCCGC
TTCGGCAGTTCGGCGAGCATGGTCAACTGCGCCGTCGAGGGCTTCGTCCGCGGCGCAGCCCTGGAGTTGCCG
CGCGGCCTGCGCATCAACGCCGTCAGCCCGACCGTGGTCAGCGAGGCGCTGCCCGGCTACGCGCCCTACTTC
CGTGGCTTCAAGCCGGTTCCGGCGGCGGACGCCGCGCTGGGCTACGCACGCAGCGTGGAAGGCGCGCAGACC
GGCCTGGTGTACCGCATCTGGTAA
Translation:
MTGLSTAKATLHWKPLTFTQREACMKIILIGASGTLGKGIDKELGERHEIVRVGHSSGDFQVDISDADSIRA
LFEKTGRFDALVAAVGKVHFGALEEMGEAQYQLGLRDKLMGQVNLVLLGREYANDGGSFTLTSGVLAEQPIR
FGSSASMVNCAVEGFVRGAALELPRGLRINAVSPTVVSEALPGYAPYFRGFKPVPAADAALGYARSVEGAQT
GLVYRIW*
AnnotationID:3663GeneID:3655
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 16:04:18
Gene Name:
Confidence Code:3
GeneProduct:probable short-chain dehydrogenase
Cell Localization:()
Synonyms:PA1066
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00106, adh_short, short chain dehydrogenase. Short: 58.0, 8e-10
COG1028, FabG, Dehydrogenases with different specificities (related to short-chain
alcohol dehydrogenases). Short: 53.7, 2e-08






   
Genomic Context:






   
Comment:


















    ReferenceID:14893




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24455




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3655
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5853
                           PA1066_tr
                           translation of PA1066
                           223
                           96.41
                           96.86
                           5
                           1095.0
     

     
     
163805
                           gb|AAG04455.1|AE004538_7
                           (AE004538) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           223
                           96.41
                           96.86
                           5
                           1095.0
     

     
     
163806
                           gb|AAM37086.1|
                           (AE011861) short chain dehydrogenase [Xanthomonas axonopodis pv. citri str. 306]
                           228
                           60.52
                           74.12
                           18
                           702.0
     

     
     
163807
                           emb|CAD17119.1|
                           (AL646074) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           225
                           50.66
                           67.55
                           26
                           598.0
     

     
     
163808
                           gb|AAQ58790.1|
                           (AE016913) probable short-chain alcohol dehydrogenase [Chromobacterium violaceum ATCC 12472]
                           223
                           47.53
                           64.12
                           25
                           564.0
     

     






      

          
GC ORFID: 46657How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1066Glimmer Score: 

          
Start: 456570Stop: 455899

          
Length: 672


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1066 translation of PA1066Homolog Bit Score 426.0

          
Other Homologs:  t_PA1066 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGACAGGATTATCCACAGCAAAGGCGACTCTACACTGGAAACCACTCACCTTCACGCAACGAGAGGCCTGT 
ATGAAAATCATCCTGATCGGCGCCAGCGGCACCCTTGGCAAGGGCATCGACAAAGAACTCGGCGAGCGCCAC 
GAGATCGTCCGGGTAGGCCACAGCAGCGGCGATTTCCAGGTCGACATCAGCGACGCGGACTCCATTCGCGCC 
CTGTTCGAGAAGACCGGTCGCTTCGACGCGCTGGTCGCCGCGGTCGGCAAGGTGCACTTCGGCGCCCTGGAG 
GAAATGGGCGAGGCGCAATACCAGCTCGGCCTGCGCGACAAGCTGATGGGCCAGGTCAACCTGGTACTGCTC 
GGCCGCGAGTACGCCAACGACGGGGGCTCCTTCACCCTCACCAGCGGCGTGCTCGCCGAGCAGCCGATCCGC 
TTCGGCAGTTCGGCGAGCATGGTCAACTGCGCCGTCGAGGGCTTCGTCCGCGGCGCAGCCCTGGAGTTGCCG 
CGCGGCCTGCGCATCAACGCCGTCAGCCCGACCGTGGTCAGCGAGGCGCTGCCCGGCTACGCGCCCTACTTC 
CGTGGCTTCAAGCCGGTTCCGGCGGCGGACGCCGCGCTGGGCTACGCACGCAGCGTGGAAGGCGCGCAGACC 
GGCCTGGTGTACCGCATCTGGTAA