ViewGene
Locus Name:
GeneID:
Location:

GeneID:3654
TrivialName: PA14_72480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72480
PAO1 Ortholog Locus:PA5492
Sequence Length:648
Protein Length:215
Start: 6455784
Stop: 6456431
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08877.1|AE004962_1 (AE004962) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 214/215 (99%), Positives = 215/215 (100%)
Sequence:
ATGTCAGAGAAGAACCCCATCGTCGGCCTGTGCCAGAAGGCCAGCTTTCTCATCAGTGCCGCCCAGGTCGAC
CAGTGCCCCCCCGACGAAGGCCTGGAAGTCGCTTTCGCCGGGCGCTCCAATGCCGGCAAGTCGAGCGCGCTG
AACACCCTCACCCACGCCAACCTGGCGCGCACCTCGAAAACCCCGGGACGTACCCAACTGCTCAATTTCTTC
GCCCTGGACGACTCGCGGCGCCTGGTGGACCTGCCCGGCTACGGCTACGCGAAGGTGCCGATCCCCCTGAAG
CAGCACTGGCAGCGCCACCTGGAAGCCTACCTGAGCAGCCGCGCAAGCCTGGCCGGGGTGTTCCTGATGATG
GACATCCGCCACCCGCTCACCGACTTCGACCGACTGATGCTGGATTGGGCCCAGGCCAGCCAGCTACCGATC
CATGTACTGATGACCAAGGCCGACAAGCTGGCCTTCGGCGCGGCCAAGAACGCCCTGCTCAAGGTACGCCGG
GAAGTCCAGCAAGGCTGGGGCGACGTCGCCACCCTGCAACTGTTCTCCGCGCCCAAGCGCCAGGGCGTCGAC
GAGGCGCAAATGGTCCTGGCGCAATGGCTGGGCCTGCTGGACGAGGACCAAGAGGCGTTCGAGGAAGCCTGA
Translation:
MSEKNPIVGLCQKASFLISAAQVDQCPPDEGLEVAFAGRSNAGKSSALNTLTHANLARTSKTPGRTQLLNFF
ALDDSRRLVDLPGYGYAKVPIPLKQHWQRHLEAYLSSRASLAGVFLMMDIRHPLTDFDRLMLDWAQASQLPI
HVLMTKADKLAFGAAKNALLKVRREVQQGWGDVATLQLFSAPKRQGVDEAQMVLAQWLGLLDEDQEAFEEA*
AnnotationID:3662GeneID:3654
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 08:08:34
Gene Name:
Confidence Code:3
GeneProduct:putative GTP-binding protein
Cell Localization:()
Synonyms:engB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:putative GTpase involved in coordination of cell cycle
Functional Category Confidence Code:5
COGs:COG0218
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53888.1| (AE016857) GTP-binding protein EngB [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 211

 Score =  330 bits (847), Expect = 3e-90
 Identities = 157/207 (75%), Positives = 182/207 (87%)

>gb|AAN65758.1|AE016202_1 (AE016774) GTP-binding protein, putative [Pseudomonas putida
           KT2440]
          Length = 210

 Score =  330 bits (845), Expect = 5e-90
 Identities = 155/207 (74%), Positives = 181/207 (87%)

>gb|AAO91266.1| (AE016965) small GTP-binding protein domain protein, putative
           [Coxiella burnetii RSA 493]
          Length = 205

 Score =  211 bits (536), Expect = 3e-54
 Identities = 104/191 (54%), Positives = 143/191 (74%), Gaps = 2/191 (1%)






 
Structural Features:
COG0218, COG0218, Predicted GTPase 
CD-Length = 200 residues,  99.0% aligned
Score =  258 bits (660), Expect = 5e-70
Identities = 97/198 (48%), Positives = 130/198 (65%), Gaps = 1/198 (0%)






   
Genomic Context:






   
Comment:
another gene name synonym: yihA


















    ReferenceID:7311




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24453




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33248




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3654_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3654
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5852
                           PA5492_tr
                           translation of PA5492
                           215
                           99.53
                           99.99
                           0
                           1099.0
     

     
     
163737
                           gb|AAG08877.1|AE004962_1
                           (AE004962) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           215
                           99.53
                           99.99
                           0
                           1099.0
     

     
     
163738
                           gb|AAO53888.1|
                           (AE016857) GTP-binding protein EngB [Pseudomonas syringae pv. tomato str. DC3000]
                           215
                           73.95
                           85.58
                           4
                           845.0
     

     
     
163739
                           gb|AAN65758.1|AE016202_1
                           (AE016774) GTP-binding protein, putative [Pseudomonas putida KT2440]
                           215
                           72.55
                           84.65
                           5
                           840.0
     

     
     
163747
                           emb|CAD03099.1|
                           (AL627280) ATP/GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhi]
                           219
                           51.59
                           65.75
                           13
                           508.0
     

     






      

          
GC ORFID: 46656How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5492Glimmer Score: 

          
Start: 5719473Stop: 5720120

          
Length: 648


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5492 translation of PA5492Homolog Bit Score 427.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3184 (ORF: BLASTX 333.0), t_PA5492 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCAGAGAAGAACCCCATCGTCGGCCTGTGCCAGAAGGCCAGCTTTCTCATCAGTGCCGCCCAGGTCGAC 
CAGTGCCCCCCCGACGAAGGCCTGGAAGTCGCTTTCGCCGGGCGCTCCAATGCCGGCAAGTCGAGCGCGCTG 
AACACCCTCACCCACGCCAACCTGGCGCGCACCTCGAAAACCCCGGGACGTACCCAACTGCTCAATTTCTTC 
GCCCTGGACGACTCGCGGCGCCTGGTGGACCTGCCCGGCTACGGCTACGCGAAGGTGCCGATCCCCCTGAAG 
CAGCACTGGCAGCGCCACCTGGAAGCCTACCTGAGCAGCCGCGCAAGCCTGGCCGGGGTGTTCCTGATGATG 
GACATCCGCCACCCGCTCACCGACTTCGACCGACTGATGCTGGATTGGGCCCAGGCCAGCCAGCTACCGATC 
CATGTACTGATGACCAAGGCCGACAAGCTGGCCTTCGGCGCGGCCAAGAACGCCCTGCTCAAGGTACGCCGG 
GAAGTCCAGCAAGGCTGGGGCGACGTCGCCACCCTGCAACTGTTCTCCGCGCCCAAGCGCCAGGGCGTCGAC 
GAGGCGCAAATGGTCCTGGCGCAATGGCTGGGCCTGCTGGACGAGGACCAAGAGGCGTTCGAGGAAGCCTGA