ViewGene
Locus Name:
GeneID:
Location:

GeneID:3653
TrivialName: PA14_65900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65900
PAO1 Ortholog Locus:PA4984
Sequence Length:648
Protein Length:215
Start: 5871204
Stop: 5870557
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08369.1|AE004911_4 (AE004911) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 213/215 (99%), Positives = 213/215 (99%)
Sequence:
ATGAACCAGGAAGTGCGCTTTTCCCGTCTGGAACCAGAGCAGCGCAAGGCGCTGCTGATCGAGGCGACCCTG
GCCTGCCTGAAGCGGCATGGCTTCCAGGGCGCCTCGGTGCGCAAGATCTGCACCGAGGCCGGGGTATCGGTG
GGCCTGATCAATCACCACTACGATGGCAAGGACGCGCTGGTGGCCGAGGCCTACCTGGCGGTCACCGGACGC
GTCATGCGCCTGCTCCGCGGTGCCATCGACACCGCGCCGGGCGGCGCCCGCCCGCGGCTCTCGGCGTTCTTC
GAGGCATCCTTCTCCGCCGAGCTGCTCGATCCGCAATTGCTCGACGCCTGGCTGGCGTTCTGGGGTGCGGTG
GGCAGCATCGAAGCGATCGGGCGGGTCCACGACCATTCCTATGGCGAGTACCGGGCGCTGCTGGTCGGCGTG
CTGCGGCAACTGGCGGAGGAGGGCGGCTGGGCGGACTTCGACGCGGAACTGGCGGCCATCAGCCTCAGCGCC
CTGCTCGACGGGCTGTGGCTGGAGTCTGGGCTGAATCCCGCGACCTTCACGCCGCGGCAGGGCGTGCAGATC
TGCGAGGCCTGGGTGGATGGCCTGGAGGCGGGCGCCCATCGCCGCTTCCGGCGTGCGACGGAAGCTTGTTGA
Translation:
MNQEVRFSRLEPEQRKALLIEATLACLKRHGFQGASVRKICTEAGVSVGLINHHYDGKDALVAEAYLAVTGR
VMRLLRGAIDTAPGGARPRLSAFFEASFSAELLDPQLLDAWLAFWGAVGSIEAIGRVHDHSYGEYRALLVGV
LRQLAEEGGWADFDAELAAISLSALLDGLWLESGLNPATFTPRQGVQICEAWVDGLEAGAHRRFRRATEAC*
AnnotationID:3661GeneID:3653
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 07:07:25
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, TetR family
Cell Localization:()
Synonyms:PA4984
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1309,pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69327.1|AE016570_4 (AE016788) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 214

 Score =  310 bits (794), Expect = 4e-84
 Identities = 159/215 (73%), Positives = 174/215 (80%), Gaps = 1/215 (0%)








 
Structural Features:
COG1309, AcrR, Transcriptional regulator [Transcription]
CD-Length = 201 residues,  95.5% aligned
Score = 59.3 bits (141), Expect = 4e-10
Identities = 48/197 (24%), Positives = 70/197 (35%), Gaps = 5/197 (2%)

pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 47.7 bits (114), Expect = 1e-06
Identities = 15/47 (31%), Positives = 25/47 (53%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7309




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24451




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35066




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3653_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3653
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5851
                           PA4984_tr
                           translation of PA4984
                           215
                           99.06
                           99.06
                           0
                           1099.0
     

     
     
163734
                           gb|AAG08369.1|AE004911_4
                           (AE004911) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           215
                           99.06
                           99.06
                           0
                           1099.0
     

     
     
163735
                           gb|AAN69327.1|AE016570_4
                           (AE016788) transcriptional regulator, TetR family [Pseudomonas putida KT2440]
                           215
                           73.95
                           80.93
                           1
                           796.0
     

     
     
163736
                           gb|AAK25085.1|
                           (AE005976) transcriptional regulator, TetR family [Caulobacter crescentus CB15]
                           222
                           38.28
                           51.80
                           27
                           349.0
     

     






      

          
GC ORFID: 46655How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4984Glimmer Score: 

          
Start: 5134887Stop: 5134240

          
Length: 648


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4984 translation of PA4984Homolog Bit Score 427.0

          
Other Homologs:  t_PA4984 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCAGGAAGTGCGCTTTTCCCGTCTGGAACCAGAGCAGCGCAAGGCGCTGCTGATCGAGGCGACCCTG 
GCCTGCCTGAAGCGGCATGGCTTCCAGGGCGCCTCGGTGCGCAAGATCTGCACCGAGGCCGGGGTATCGGTG 
GGCCTGATCAATCACCACTACGATGGCAAGGACGCGCTGGTGGCCGAGGCCTACCTGGCGGTCACCGGACGC 
GTCATGCGCCTGCTCCGCGGTGCCATCGACACCGCGCCGGGCGGCGCCCGCCCGCGGCTCTCGGCGTTCTTC 
GAGGCATCCTTCTCCGCCGAGCTGCTCGATCCGCAATTGCTCGACGCCTGGCTGGCGTTCTGGGGTGCGGTG 
GGCAGCATCGAAGCGATCGGGCGGGTCCACGACCATTCCTATGGCGAGTACCGGGCGCTGCTGGTCGGCGTG 
CTGCGGCAACTGGCGGAGGAGGGCGGCTGGGCGGACTTCGACGCGGAACTGGCGGCCATCAGCCTCAGCGCC 
CTGCTCGACGGGCTGTGGCTGGAGTCTGGGCTGAATCCCGCGACCTTCACGCCGCGGCAGGGCGTGCAGATC 
TGCGAGGCCTGGGTGGATGGCCTGGAGGCGGGCGCCCATCGCCGCTTCCGGCGTGCGACGGAAGCTTGTTGA