ViewGene
Locus Name:
GeneID:
Location:

GeneID:3651
TrivialName: PA14_11410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11410
PAO1 Ortholog Locus:PA4055
Sequence Length:660
Protein Length:219
Start: 989984
Stop: 990643
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07442.1|AE004822_2 (AE004822) riboflavin synthase alpha chain [Pseudomonas aeruginosa PAO1]
Identities = 219/219 (100%), Positives = 219/219 (100%)
Sequence:
ATGTTCACCGGCATAATCGAATCGATCGGCAGCGTCCGCGCGATGACGCCCAAGGGCGGCGACCTGCGGGTC
TACATCGCCACCGGCAAGCTCGACCTGGGCGACGTCAAGCTCGGCGACAGCATCGCGGTCAACGGCGTCTGC
CTGACCGCGGTGGAACTGCCCGGCGATGGCTTCTGGGCCGACGTCAGCCGCGAGAGCCTGGCGCGCACCGCC
TTCCAGCACCTGAAGGTGGGCAGCCGGGTGAACCTGGAAAAGGCCCTGACGCCGACCACCCGCCTCGGCGGA
CACCTGGTGAGCGGCCACGTCGACGGCGTCGGCGAGGTGCTCAAGCGCGAGGAGAACGCCCGCGCCATCCAG
TTCACCGTGCGTGCCCCGCGCGAACTGGCCAGGTACATCGCGCACAAGGGCTCGATCACCGTCGACGGCACC
AGCCTCACGGTGAACGCGGTGAACGGCGCGGAGTTCGAGCTGACCATCGTCCCGCATACGCTCAGCGAAACC
ATCATGGCCGAGTACCAGCCCGGACGCCGGGTCAACCTCGAGGTCGACCTGCTGGCCCGTTACCTGGAGCGC
CTGCTGCTTGGCGACAAGGCCGCCGAGCCCAGCGCCTCCGGCATCAGCGAAGCGTTTCTCGCCGAGAACGGT
TTTCTCAAGTAA
Translation:
MFTGIIESIGSVRAMTPKGGDLRVYIATGKLDLGDVKLGDSIAVNGVCLTAVELPGDGFWADVSRESLARTA
FQHLKVGSRVNLEKALTPTTRLGGHLVSGHVDGVGEVLKREENARAIQFTVRAPRELARYIAHKGSITVDGT
SLTVNAVNGAEFELTIVPHTLSETIMAEYQPGRRVNLEVDLLARYLERLLLGDKAAEPSASGISEAFLAENG
FLK*
AnnotationID:3659GeneID:3651
AnnotatorUID: urbach
Modification Date/Time: 2004-10-06 19:07:04
Gene Name:ribC
Confidence Code:2
GeneProduct:riboflavin synthase alpha chain
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0307,KOG3310,pfam00677
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
flavin biosynthesis
Homology:
dbj|BAC44850.1| (AB065118) riboflavin synthase [Photobacterium phosphoreum]
Length: 219
PctIdentity: 60.27
PctSimilarity: 77.16
Gaps: 1
BitScore: 678.0
Structural Features:
gnl|CDD|10181 COG0307, RibC, Riboflavin synthase alpha chain [Coenzyme metabolism]
Length = 204
Score =  275 bits (706), Expect = 4e-75
Identities = 110/207 (53%), Positives = 140/207 (67%), Gaps = 4/207 (1%)
Genomic Context:






   
Comment:


















    ReferenceID:7305




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24447




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34661




  
Author/Investigator(s):
        Kasai S, Sumimoto T.





  
Title:
        Stimulated biosynthesis of flavins in Photobacterium phosphoreum IFO 13896 and the presence of complete rib operons in two species of luminous bacteria.




  
PubMed:
        12444973


MedLine:
        




    
Source:
Eur J Biochem. 2002 Dec;269(23):5851-60.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=22335717&dopt=Citation









           
Homologs By Global Alignment 

           

       



     
Gene ID:3651
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5848
                           PA4055_tr
                           translation of PA4055
                           219
                           99.99
                           99.99
                           0
                           1097.0
     

     
     
162922
                           gb|AAG07442.1|AE004822_2
                           (AE004822) riboflavin synthase alpha chain [Pseudomonas aeruginosa PAO1]
                           219
                           99.99
                           99.99
                           0
                           1097.0
     

     
     
162923
                           gb|AAO54233.1|
                           (AE016858) riboflavin synthase, alpha subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           220
                           85.90
                           92.72
                           1
                           966.0
     

     
     
162924
                           gb|AAN66142.1|AE016242_10
                           (AE016775) riboflavin synthase, alpha subunit [Pseudomonas putida KT2440]
                           221
                           85.52
                           93.21
                           2
                           962.0
     

     
     
162925
                           dbj|BAC44850.1|
                           (AB065118) riboflavin synthase [Photobacterium phosphoreum]
                           219
                           60.27
                           77.16
                           1
                           678.0
     

     






      

          
GC ORFID: 46653How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4055Glimmer Score: 

          
Start: 3963953Stop: 3963294

          
Length: 660


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4055 translation of PA4055Homolog Bit Score 427.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5263 (ORF: BLASTX 378.0), t_PA4055 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCACCGGCATAATCGAATCGATCGGCAGCGTCCGCGCGATGACGCCCAAGGGCGGCGACCTGCGGGTC 
TACATCGCCACCGGCAAGCTCGACCTGGGCGACGTCAAGCTCGGCGACAGCATCGCGGTCAACGGCGTCTGC 
CTGACCGCGGTGGAACTGCCCGGCGATGGCTTCTGGGCCGACGTCAGCCGCGAGAGCCTGGCGCGCACCGCC 
TTCCAGCACCTGAAGGTGGGCAGCCGGGTGAACCTGGAAAAGGCCCTGACGCCGACCACCCGCCTCGGCGGA 
CACCTGGTGAGCGGCCACGTCGACGGCGTCGGCGAGGTGCTCAAGCGCGAGGAGAACGCCCGCGCCATCCAG 
TTCACCGTGCGTGCCCCGCGCGAACTGGCCAGGTACATCGCGCACAAGGGCTCGATCACCGTCGACGGCACC 
AGCCTCACGGTGAACGCGGTGAACGGCGCGGAGTTCGAGCTGACCATCGTCCCGCATACGCTCAGCGAAACC 
ATCATGGCCGAGTACCAGCCCGGACGCCGGGTCAACCTCGAGGTCGACCTGCTGGCCCGTTACCTGGAGCGC 
CTGCTGCTTGGCGACAAGGCCGCCGAGCCCAGCGCCTCCGGCATCAGCGAAGCGTTTCTCGCCGAGAACGGT 
TTTCTCAAGTAA