ViewGene
Locus Name:
GeneID:
Location:

GeneID:3650
TrivialName: PA14_16830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16830
PAO1 Ortholog Locus:PA3675
Sequence Length:681
Protein Length:226
Start: 1442553
Stop: 1441873
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07063.1|AE004787_3 (AE004787) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 225/226 (99%), Positives = 226/226 (100%)
Sequence:
ATGTTCCGACTCACTGCCCTCTGCGCCGGCCTGCTGCTCTCGGCCAACGCCCTCGCCCTGTCCCTCGCCGAC
CTGTCGCAGAACGACGCCTCCAGCGGCCTGAAGGACGCCCTGACCCAGGGCGCGCAGATCGCCGTCCGCCAG
CTTGGCCAGCCGGGCGGCTTCAACAACAACCCGGACGTGCGCATCGAACTGCCCGGCAAGCTGGGCAAGGCG
GCGAAGCTGATGAAGCAGTTCGGCATGGGCGCCCAGGTCGACCAGCTCGAGGCGAGCATGAACCGCGCCGCC
GAGGCTGCCGTGCCGCAGGCCCAGGGCCTGCTGGTGGAGGCGGTGAAGAAGATGACCGTGGCCGACGCCAAG
GGCATCCTCAAGGGCGGTGACGACGCCGCCACCGAATACCTGGACAAGTCCAGCCGCGAACAGCTGCGCGCG
AAGTTCCTGCCGATCGTCAAGCAGGCCACCGACGAGGTCGGCCTGGTCAAGCAGTACAACGCCTTCGCCAGC
CAGGCGGCGACCCTTGGGGTGGTCGATGCGAAGAGCGCCAACGTCGAGGGCTATGTCACCGAACAGGCCCTC
GACGGGCTCTTCGAGATGATCGCCAAGCAGGAGAAGAGCATCCGCCAGAACCCGGCGGCGGCCGCCACCGGC
CTGGCCAAGAAGGTCTTCGGCGCGGCCAGGTGA
Translation:
MFRLTALCAGLLLSANALALSLADLSQNDASSGLKDALTQGAQIAVRQLGQPGGFNNNPDVRIELPGKLGKA
AKLMKQFGMGAQVDQLEASMNRAAEAAVPQAQGLLVEAVKKMTVADAKGILKGGDDAATEYLDKSSREQLRA
KFLPIVKQATDEVGLVKQYNAFASQAATLGVVDAKSANVEGYVTEQALDGLFEMIAKQEKSIRQNPAAAATG
LAKKVFGAAR*
AnnotationID:3658GeneID:3650
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 10:10:00
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3675
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7303




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24445




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3650
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5847
                           PA3675_tr
                           translation of PA3675
                           226
                           99.55
                           99.99
                           0
                           1097.0
     

     
     
162918
                           gb|AAG07063.1|AE004787_3
                           (AE004787) hypothetical protein PA3675 [Pseudomonas aeruginosa PAO1]
                           226
                           99.55
                           99.99
                           0
                           1097.0
     

     
     
162920
                           gb|AAN67139.1|AE016342_11
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           230
                           74.34
                           84.34
                           6
                           849.0
     

     
     
162919
                           gb|AAO55038.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           230
                           73.47
                           85.21
                           5
                           848.0
     

     
     
162921
                           gb|AAR34585.1|
                           (AE017211) conserved hypothetical protein [Geobacter sulfurreducens PCA]
                           244
                           39.34
                           56.14
                           19
                           391.0
     

     






      

          
GC ORFID: 46652How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3675Glimmer Score: 

          
Start: 3511384Stop: 3512064

          
Length: 681


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3675 translation of PA3675Homolog Bit Score 427.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4812 (ORF: BLASTX 331.0), t_PA3675 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCCGACTCACTGCCCTCTGCGCCGGCCTGCTGCTCTCGGCCAACGCCCTCGCCCTGTCCCTCGCCGAC 
CTGTCGCAGAACGACGCCTCCAGCGGCCTGAAGGACGCCCTGACCCAGGGCGCGCAGATCGCCGTCCGCCAG 
CTTGGCCAGCCGGGCGGCTTCAACAACAACCCGGACGTGCGCATCGAACTGCCCGGCAAGCTGGGCAAGGCG 
GCGAAGCTGATGAAGCAGTTCGGCATGGGCGCCCAGGTCGACCAGCTCGAGGCGAGCATGAACCGCGCCGCC 
GAGGCTGCCGTGCCGCAGGCCCAGGGCCTGCTGGTGGAGGCGGTGAAGAAGATGACCGTGGCCGACGCCAAG 
GGCATCCTCAAGGGCGGTGACGACGCCGCCACCGAATACCTGGACAAGTCCAGCCGCGAACAGCTGCGCGCG 
AAGTTCCTGCCGATCGTCAAGCAGGCCACCGACGAGGTCGGCCTGGTCAAGCAGTACAACGCCTTCGCCAGC 
CAGGCGGCGACCCTTGGGGTGGTCGATGCGAAGAGCGCCAACGTCGAGGGCTATGTCACCGAACAGGCCCTC 
GACGGGCTCTTCGAGATGATCGCCAAGCAGGAGAAGAGCATCCGCCAGAACCCGGCGGCGGCCGCCACCGGC 
CTGGCCAAGAAGGTCTTCGGCGCGGCCAGGTGA