ViewGene
Locus Name:
GeneID:
Location:

GeneID:365
TrivialName: PA14_20860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20860
PAO1 Ortholog Locus:PA3340
Sequence Length:2046
Protein Length:681
Start: 1795468
Stop: 1797513
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06728.1|AE004756_6 (AE004756) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 668/682 (97%), Positives = 670/682 (98%), Gaps = 1/682 (0%)
Sequence:
ATGCCCGGTAAAGCCTTGCGTGTCATGTTGTGTGCCTGGTCGTGCCTGTTGGCCGGGCAGGCGAGCGCCCTG
GGAGTGGGAGACATCACCCTGCATTCGGCGCTCAACCAGCCGCTGGATGCGGATATCGAACTGCTTGACGTC
GGCGATCTCGGCGCGGACGAGATCGAGGTCCGCCTGGCGGGCGCCGACGTCTTCGCCGCGGCCGGGGTGGAA
CGCTTGCAGTTCCTCAACGAGCTGCGTTTCAGTCTGGTGCTCCAGGGGCGCGGTGGCAATCGCATCCATGTG
TCCTCGAGCCGACCGGTGCAGGAGCCCTACCTGAATTTCCTGGTGGAGGTGGCCCGCCCCAACGGCCGCATT
GTCCGCGAATTCACCGTACTGCTCGATCCGCTCGGTTATACGCCGCGCATGCTTCCGGCCGCGCGCAGCGGG
ATCGAGCCGCAGCGGCAATCCTCGACGCCGGCGCCCGCGCCGCGTAGTGCCGCGGTCGTCGTAGACCCGGCA
CTGCTGGAGCCGGGCGACGACTACCTGACTCGCCCCAGCGACAACCTCTGGGCCATCAGCGGACGCCTGCGT
GGTGCCGGCAACGCCGATCGCGCGCAACTCATGGAGGCCCTGTACCAGCTCAATCCGCAGGCCTTCGTCAAT
GCCGACCGGCACCGGCTCAAGGCCGGCGCGCGGCTGCGTCTGCCGGCCGGCTACCAGCCGGAGCGAGGCGCG
CCCGGCGCCGTGAAGGAGGCGGCCGTGGAAGTCCTGCCGCCAGCCGATGCCGCCGTGGTGGAAAACGCTCCG
GCGGCTCTCGTCGAGGCGCAGCGCCAGGCGGATGCCGAGGCCGAGGCGCTGGCCCGGCAACGGGAGGAACTG
AGCCAGCGGATGGACGATCTGCAACGCCAGTTGCAGGCCTTGCAGGAACAACTGCAGCAGCGCGATCGCCAG
GTCGCCGAACTGCAACAGCAACTGGCCCGGCGCCAGGCGGTGCGGCCCGCGGCGCCGCCGCCCGCCGCGGCC
GCGCCTTCGGTTGCGCAACCGGTTGAAACGCCGACGGACTCGCAGCACTGGCGCTGGATGATCGTCCTGCTG
CTGGTCCTCGCCCTGCTCGGCGTATTGCTGTTGCGTCGCCGCCGCGAAGAGACTCCTGTCCCGGCGGTCGAA
CCGAAGCGCCGGGTCGCCCTGAACCTGCCGCTGCGGCGTGCGCCGCGCCCCCCGGCGGCCGCACCGGCGCCG
GCAAAGGTCGAGGAACAGGCCAGGCCGCCGGTCGCCGTTCCCTCCAGCCCGCCGCCGTCTCCTCCGCCTGCT
CCGGCCGCCGCTCCGCGCGCCGCCATGGCTGCGGCGGACAAGCTGGACGGCGCCGACATCTATATCGCCTAC
GGTCGCTACGGACAGGCCCGCGACCTGCTGCGTCAGGTACTCGCCGAGCAGCCGCAGCGCCTGAGCGCGCGG
ATGAAGCTGTTGCTGGTGCTGGCTGAGCTGGGCGATGCGGCCGGCTTCGACGCGCTGGCCGAGGAAACCCTG
GCCAGTGGCGGCAACCCGGAGGCCATCGACGAGTTGCGCGGACGCTACCCGGCGCTGCTACAGATGCCGGCG
ACCGAGACGCCGGCGGCAACCAAGGACGACGACTGGAGCGACCTGCCGCTGGCCGAGCCGCCCGCCGCGCAG
CAGCCGGATGCGACCTCGGGCGCCGACGGCTTCGGCGACCTCAACCTCGATCTCGATCTCGACTGGGGCGCC
CTGGAGAATCCCCTGGACAACCCCGACCTGCCGCGCCGCGCCGCTGCCGGCAAGGCGGAACCGGCGGAGGAG
CCCCTGGCGTTCGAGAGCAATCTCCATGAACTGCCGGATGTCGCCGAGTACGAACACCTCGAACTCGACCAG
CCGGAGCCGGCCACGGTGCCGCCGGAGGAGGCCTCGGCCAGCCTGGACCGGGCCCGCGCCTGCATCGACAGC
GGCGATCTCGACCAGGCCAGCCGCATCCTGCGCCTGGTGGTGGCGCACGGCGACCCGTGGCAGAAGGCCGAG
GCGCGCGAGTTGCTGGCGCTGATCGCCTGA
Translation:
MPGKALRVMLCAWSCLLAGQASALGVGDITLHSALNQPLDADIELLDVGDLGADEIEVRLAGADVFAAAGVE
RLQFLNELRFSLVLQGRGGNRIHVSSSRPVQEPYLNFLVEVARPNGRIVREFTVLLDPLGYTPRMLPAARSG
IEPQRQSSTPAPAPRSAAVVVDPALLEPGDDYLTRPSDNLWAISGRLRGAGNADRAQLMEALYQLNPQAFVN
ADRHRLKAGARLRLPAGYQPERGAPGAVKEAAVEVLPPADAAVVENAPAALVEAQRQADAEAEALARQREEL
SQRMDDLQRQLQALQEQLQQRDRQVAELQQQLARRQAVRPAAPPPAAAAPSVAQPVETPTDSQHWRWMIVLL
LVLALLGVLLLRRRREETPVPAVEPKRRVALNLPLRRAPRPPAAAPAPAKVEEQARPPVAVPSSPPPSPPPA
PAAAPRAAMAAADKLDGADIYIAYGRYGQARDLLRQVLAEQPQRLSARMKLLLVLAELGDAAGFDALAEETL
ASGGNPEAIDELRGRYPALLQMPATETPAATKDDDWSDLPLAEPPAAQQPDATSGADGFGDLNLDLDLDWGA
LENPLDNPDLPRRAAAGKAEPAEEPLAFESNLHELPDVAEYEHLELDQPEPATVPPEEASASLDRARACIDS
GDLDQASRILRLVVAHGDPWQKAEARELLALIA*
AnnotationID:374GeneID:365
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 10:10:38
Gene Name:
Confidence Code:3
GeneProduct:putative Tfp pilus assembly protein FimV
Cell Localization:()
Synonyms:PA3340
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3170
Secondary Functional Category(ies):motility and attachment
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3170, FimV, Tfp pilus assembly protein FimV 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 755 residues,  98.5% aligned
Score =  436 bits (1122), Expect = 4e-123
Identities = 314/749 (41%), Positives = 391/749 (52%), Gaps = 73/749 (9%)








   
Genomic Context:






   
Comment:


















    ReferenceID:733




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17875




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32225




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:365_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:365
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
610
                           PA3340_tr
                           translation of PA3340
                           682
                           97.94
                           98.24
                           1
                           3374.0
     

     
     
28942
                           gb|AAG06728.1|AE004756_6
                           (AE004756) hypothetical protein PA3340 [Pseudomonas aeruginosa PAO1]
                           682
                           97.94
                           98.24
                           1
                           3374.0
     

     






      

          
GC ORFID: 43367How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3340Glimmer Score: 

          
Start: 3158464Stop: 3156419

          
Length: 2046


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3340 translation of PA3340Homolog Bit Score 1303.0

          
Other Homologs:  t_PA3340 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGGTAAAGCCTTGCGTGTCATGTTGTGTGCCTGGTCGTGCCTGTTGGCCGGGCAGGCGAGCGCCCTG 
GGAGTGGGAGACATCACCCTGCATTCGGCGCTCAACCAGCCGCTGGATGCGGATATCGAACTGCTTGACGTC 
GGCGATCTCGGCGCGGACGAGATCGAGGTCCGCCTGGCGGGCGCCGACGTCTTCGCCGCGGCCGGGGTGGAA 
CGCTTGCAGTTCCTCAACGAGCTGCGTTTCAGTCTGGTGCTCCAGGGGCGCGGTGGCAATCGCATCCATGTG 
TCCTCGAGCCGACCGGTGCAGGAGCCCTACCTGAATTTCCTGGTGGAGGTGGCCCGCCCCAACGGCCGCATT 
GTCCGCGAATTCACCGTACTGCTCGATCCGCTCGGTTATACGCCGCGCATGCTTCCGGCCGCGCGCAGCGGG 
ATCGAGCCGCAGCGGCAATCCTCGACGCCGGCGCCCGCGCCGCGTAGTGCCGCGGTCGTCGTAGACCCGGCA 
CTGCTGGAGCCGGGCGACGACTACCTGACTCGCCCCAGCGACAACCTCTGGGCCATCAGCGGACGCCTGCGT 
GGTGCCGGCAACGCCGATCGCGCGCAACTCATGGAGGCCCTGTACCAGCTCAATCCGCAGGCCTTCGTCAAT 
GCCGACCGGCACCGGCTCAAGGCCGGCGCGCGGCTGCGTCTGCCGGCCGGCTACCAGCCGGAGCGAGGCGCG 
CCCGGCGCCGTGAAGGAGGCGGCCGTGGAAGTCCTGCCGCCAGCCGATGCCGCCGTGGTGGAAAACGCTCCG 
GCGGCTCTCGTCGAGGCGCAGCGCCAGGCGGATGCCGAGGCCGAGGCGCTGGCCCGGCAACGGGAGGAACTG 
AGCCAGCGGATGGACGATCTGCAACGCCAGTTGCAGGCCTTGCAGGAACAACTGCAGCAGCGCGATCGCCAG 
GTCGCCGAACTGCAACAGCAACTGGCCCGGCGCCAGGCGGTGCGGCCCGCGGCGCCGCCGCCCGCCGCGGCC 
GCGCCTTCGGTTGCGCAACCGGTTGAAACGCCGACGGACTCGCAGCACTGGCGCTGGATGATCGTCCTGCTG 
CTGGTCCTCGCCCTGCTCGGCGTATTGCTGTTGCGTCGCCGCCGCGAAGAGACTCCTGTCCCGGCGGTCGAA 
CCGAAGCGCCGGGTCGCCCTGAACCTGCCGCTGCGGCGTGCGCCGCGCCCCCCGGCGGCCGCACCGGCGCCG 
GCAAAGGTCGAGGAACAGGCCAGGCCGCCGGTCGCCGTTCCCTCCAGCCCGCCGCCGTCTCCTCCGCCTGCT 
CCGGCCGCCGCTCCGCGCGCCGCCATGGCTGCGGCGGACAAGCTGGACGGCGCCGACATCTATATCGCCTAC 
GGTCGCTACGGACAGGCCCGCGACCTGCTGCGTCAGGTACTCGCCGAGCAGCCGCAGCGCCTGAGCGCGCGG 
ATGAAGCTGTTGCTGGTGCTGGCTGAGCTGGGCGATGCGGCCGGCTTCGACGCGCTGGCCGAGGAAACCCTG 
GCCAGTGGCGGCAACCCGGAGGCCATCGACGAGTTGCGCGGACGCTACCCGGCGCTGCTACAGATGCCGGCG 
ACCGAGACGCCGGCGGCAACCAAGGACGACGACTGGAGCGACCTGCCGCTGGCCGAGCCGCCCGCCGCGCAG 
CAGCCGGATGCGACCTCGGGCGCCGACGGCTTCGGCGACCTCAACCTCGATCTCGATCTCGACTGGGGCGCC 
CTGGAGAATCCCCTGGACAACCCCGACCTGCCGCGCCGCGCCGCTGCCGGCAAGGCGGAACCGGCGGAGGAG 
CCCCTGGCGTTCGAGAGCAATCTCCATGAACTGCCGGATGTCGCCGAGTACGAACACCTCGAACTCGACCAG 
CCGGAGCCGGCCACGGTGCCGCCGGAGGAGGCCTCGGCCAGCCTGGACCGGGCCCGCGCCTGCATCGACAGC 
GGCGATCTCGACCAGGCCAGCCGCATCCTGCGCCTGGTGGTGGCGCACGGCGACCCGTGGCAGAAGGCCGAG 
GCGCGCGAGTTGCTGGCGCTGATCGCCTGA