ViewGene

Locus Name:
GeneID:
Location:

GeneID:3649
TrivialName: PA14_25800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25800
PAO1 Ortholog Locus:PA2957
Sequence Length:639
Protein Length:212
Start: 2251906
Stop: 2252544
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06345.1|AE004722_1 (AE004722) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 212/212 (100%), Positives = 212/212 (100%)
Sequence:
ATGCAGAAAGAGCCTCGCAAAGTTCGTGAATTTCGTCGCCGTGAACAGGAGATTCTCGATACCGCCCTCAAG
CTGTTCCTCGAACAGGGGGAAGACAGCGTAACGGTCGAGATGATCGCGGATGCCGTCGGCATCGGCAAAGGC
ACGATCTACAAGCACTTCAAGTCCAAGGCGGAGATCTACCTGCGCCTGATGCTGGACTACGAGCGCGATCTC
GCCGCCCTGTTCCATTCCGAAGACGTAGCCCGCGACAAGGAAGCCCTGTCGCGCGCCTACTTCGAGTTCCGC
ATGCGCGATCCGCAGCGCTACCGCCTGTTCGACCGCCTGGAAGAGAAGGTGGTGAAGACCAGCCAGGTGCCG
GAGATGGTCGAGGAACTGCACAAGATCCGCGCCTCCAACTTCGAACGCCTGACCCAGCTGATCAAGGAGCGT
ATCGCCGACGGCAAGCTGGAGAACGTTCCGCCGTACTTCCATTATTGCGCTGCCTGGGCGTTGGTGCATGGC
GCCGTGGCGCTGTACCACTCGCCGTTCTGGCGCGAGGTGCTGGAAGACCAGGAAGGTTTCTTCCACTTCCTG
ATGGATATCGGCGTGCGCATGGGCAACAAGCGCAAGCGCGAAGGCGACGCTCCCAGCGCCTGA
Translation:
MQKEPRKVREFRRREQEILDTALKLFLEQGEDSVTVEMIADAVGIGKGTIYKHFKSKAEIYLRLMLDYERDL
AALFHSEDVARDKEALSRAYFEFRMRDPQRYRLFDRLEEKVVKTSQVPEMVEELHKIRASNFERLTQLIKER
IADGKLENVPPYFHYCAAWALVHGAVALYHSPFWREVLEDQEGFFHFLMDIGVRMGNKRKREGDAPSA*
AnnotationID:3657GeneID:3649
AnnotatorUID: diggins
Modification Date/Time: 2005-04-10 11:11:40
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, TetR family
Cell Localization:()
Synonyms:PA2957
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57290.1| (AE016869) transcriptional regulator, TetR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 219

 Score =  380 bits (977), Expect = e-105
 Identities = 188/211 (89%), Positives = 197/211 (93%)

>gb|AAN67583.1|AE016388_3 (AE016781) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 211

 Score =  380 bits (975), Expect = e-105
 Identities = 188/206 (91%), Positives = 195/206 (94%)
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 60.7 bits (148), Expect = 1e-10
Identities = 25/47 (53%), Positives = 32/47 (68%)
Genomic Context:
Comment:
ReferenceID:7301
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24443
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36089
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3649_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3649

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5846 PA2957_tr translation of PA2957 212 99.99 99.99 0 1097.0
162915 gb|AAG06345.1|AE004722_1 (AE004722) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 212 99.99 99.99 0 1097.0
162917 gb|AAN67583.1|AE016388_3 (AE016781) transcriptional regulator, TetR family [Pseudomonas putida KT2440] 212 89.62 93.39 1 974.0
162916 gb|AAO57290.1| (AE016869) transcriptional regulator, TetR family [Pseudomonas syringae pv. tomato str. DC3000] 219 85.84 89.95 7 976.0
GC ORFID: 46651How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2957Glimmer Score:
Start: 2702019Stop: 2701381
Length: 639
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2957 translation of PA2957Homolog Bit Score 427.0
Other Homologs: psyr_15may02_Scaffold16_revised_gene2618 (ORF: BLASTX 382.0), t_PA2957 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGAAAGAGCCTCGCAAAGTTCGTGAATTTCGTCGCCGTGAACAGGAGATTCTCGATACCGCCCTCAAG
CTGTTCCTCGAACAGGGGGAAGACAGCGTAACGGTCGAGATGATCGCGGATGCCGTCGGCATCGGCAAAGGC
ACGATCTACAAGCACTTCAAGTCCAAGGCGGAGATCTACCTGCGCCTGATGCTGGACTACGAGCGCGATCTC
GCCGCCCTGTTCCATTCCGAAGACGTAGCCCGCGACAAGGAAGCCCTGTCGCGCGCCTACTTCGAGTTCCGC
ATGCGCGATCCGCAGCGCTACCGCCTGTTCGACCGCCTGGAAGAGAAGGTGGTGAAGACCAGCCAGGTGCCG
GAGATGGTCGAGGAACTGCACAAGATCCGCGCCTCCAACTTCGAACGCCTGACCCAGCTGATCAAGGAGCGT
ATCGCCGACGGCAAGCTGGAGAACGTTCCGCCGTACTTCCATTATTGCGCTGCCTGGGCGTTGGTGCATGGC
GCCGTGGCGCTGTACCACTCGCCGTTCTGGCGCGAGGTGCTGGAAGACCAGGAAGGTTTCTTCCACTTCCTG
ATGGATATCGGCGTGCGCATGGGCAACAAGCGCAAGCGCGAAGGCGACGCTCCCAGCGCCTGA