ViewGene
Locus Name:
GeneID:
Location:

GeneID:3648
TrivialName: PA14_26000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26000
PAO1 Ortholog Locus:PA2941
Sequence Length:645
Protein Length:214
Start: 2271476
Stop: 2272120
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06329.1|AE004720_5 (AE004720) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 211/214 (98%), Positives = 214/214 (100%)
Sequence:
ATGGGTGCGGATGCCAGGAGCAGACCCGGAGCCCTGCGCGGCGGTCTTGGCGGCGCCCTGAGCCAGGGTGCG
GAGGGCGCCATCCAATGGTTGCCGACCCTGCTGCGCGGACGTCCCCGACAGCGCCGCGACCTGCTTCGCCAG
CCGCGCAGCCGGCGCCCGGGCGAACTCTGGCTGGTGATCGTCGATGCCTCCGCCAGCACCCGCCGGTACGGC
GCTCTGGCCCAGGCCAAGGGGTTGTTGGCGACGCTGTTCGAGGAGGCCTATCGGCAGCGCGTCCGCCTGGCC
GTGCTGCACGCCACCGGGCAGCAGGCGCAATGGCTCTGGCAGGGGCAGAAGGCTTCGCGGGAGTTGCAGGAC
TGGCTACGCCAGCTGGGCGCCGGCGGCGGTACGCCGCTGCTCGACGCCCTGCACCAGGCTGCTGGCTGGCTG
GCGCGCCGACAGCGGCAGAAACCCGCCGAGCATCAGCGTCTGCTGGTGCTTACCGACGGCCGCCTGCGCGAC
TGGCCGGCGCTGCCGGAGGCTGCCTGCCCGAGTCTGCTGATCGACCTCGAAAGCGGCCCGCTGCGCCTGGGC
AAGGCCGAGCGCCTGGCCCGGGAGCTGGGGGCCGAGTATCGGCATATCAGCGAATTGAACGAAGTCTGA
Translation:
MGADARSRPGALRGGLGGALSQGAEGAIQWLPTLLRGRPRQRRDLLRQPRSRRPGELWLVIVDASASTRRYG
ALAQAKGLLATLFEEAYRQRVRLAVLHATGQQAQWLWQGQKASRELQDWLRQLGAGGGTPLLDALHQAAGWL
ARRQRQKPAEHQRLLVLTDGRLRDWPALPEAACPSLLIDLESGPLRLGKAERLARELGAEYRHISELNEV*
AnnotationID:3656GeneID:3648
AnnotatorUID: diggins
Modification Date/Time: 2005-06-14 06:06:39
Gene Name:
Confidence Code:3
GeneProduct:putative magnesium chelatase
Cell Localization:()
Synonyms:PA2941
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01451
Secondary Functional Category(ies):central intermediary metabolism
EC Number:6.6.1.1
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
cd01451, Magnesium chelatase
CD-Length = 178 residues,  93.8% aligned
Score = 77.8 bits (190), Expect = 9e-16







   
Genomic Context:






   
Comment:


















    ReferenceID:7299




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24441




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36103




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3648_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3648
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5845
                           PA2941_tr
                           translation of PA2941
                           214
                           98.59
                           99.99
                           0
                           1099.0
     

     
     
162912
                           gb|AAG06329.1|AE004720_5
                           (AE004720) hypothetical protein PA2941 [Pseudomonas aeruginosa PAO1]
                           214
                           98.59
                           99.99
                           0
                           1099.0
     

     
     
162913
                           gb|AAO56634.1|
                           (AE016867) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           214
                           57.00
                           70.56
                           11
                           629.0
     

     
     
162914
                           gb|AAN69106.1|AE016544_4
                           (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440]
                           215
                           52.09
                           64.18
                           20
                           564.0
     

     






      

          
GC ORFID: 46650How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2941Glimmer Score: 

          
Start: 2682449Stop: 2681805

          
Length: 645


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2941 translation of PA2941Homolog Bit Score 427.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7247 (ORF: BLASTX 248.0), t_PA2941 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGTGCGGATGCCAGGAGCAGACCCGGAGCCCTGCGCGGCGGTCTTGGCGGCGCCCTGAGCCAGGGTGCG 
GAGGGCGCCATCCAATGGTTGCCGACCCTGCTGCGCGGACGTCCCCGACAGCGCCGCGACCTGCTTCGCCAG 
CCGCGCAGCCGGCGCCCGGGCGAACTCTGGCTGGTGATCGTCGATGCCTCCGCCAGCACCCGCCGGTACGGC 
GCTCTGGCCCAGGCCAAGGGGTTGTTGGCGACGCTGTTCGAGGAGGCCTATCGGCAGCGCGTCCGCCTGGCC 
GTGCTGCACGCCACCGGGCAGCAGGCGCAATGGCTCTGGCAGGGGCAGAAGGCTTCGCGGGAGTTGCAGGAC 
TGGCTACGCCAGCTGGGCGCCGGCGGCGGTACGCCGCTGCTCGACGCCCTGCACCAGGCTGCTGGCTGGCTG 
GCGCGCCGACAGCGGCAGAAACCCGCCGAGCATCAGCGTCTGCTGGTGCTTACCGACGGCCGCCTGCGCGAC 
TGGCCGGCGCTGCCGGAGGCTGCCTGCCCGAGTCTGCTGATCGACCTCGAAAGCGGCCCGCTGCGCCTGGGC 
AAGGCCGAGCGCCTGGCCCGGGAGCTGGGGGCCGAGTATCGGCATATCAGCGAATTGAACGAAGTCTGA