ViewGene
Locus Name:
GeneID:
Location:

GeneID:3647
TrivialName: PA14_30410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30410
PAO1 Ortholog Locus:PA2604
Sequence Length:669
Protein Length:222
Start: 2634108
Stop: 2633440
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05992.1|AE004689_4 (AE004689) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 222/222 (100%), Positives = 222/222 (100%)
Sequence:
ATGCAAGAACAGCAATATCAGCTGAACTCCGCCGTCGCGGAACAGCGTGAAGTCAGCGGCGTTCTGCGCAAT
ACCTACGGCCTGCTGGCACTCACCCTGGCCTTCAGCGGCCTGGTGGCCTACGTTTCGCAGCAGATGCGCCTG
CCCTATCCGAACGTGTTCGTGGTGCTGATCGGCTTCTACGGCCTGTTCTTCCTCACCGTGAAGCTGCGCAAC
AGCGCCTGGGGGCTGGTCAGCACTTTCGCCCTGACCGGCTTCATGGGCTACACGCTCGGCCCGATCCTCAAC
ATGTACCTCGGCCTGCCCAACGGCGGCAGCGTCATCACTTCGGCGTTCGCCATGACCGCCCTGGTGTTCTTC
GGCCTGTCCGCCTATGTGCTGACCACCCGCAAGGACATGAGCTTCCTGTCCGGCTTCATCACCGCCGGCTTC
TTCGTCCTGCTGGGCGCCGTGCTGGTATCGCTGTTCTTCCAGATCAGTGGCCTGCAACTGGCGATCAGCGCC
GGCTTCGTCCTGTTCTCCTCGGCGATGATCCTCTACCAGACCAGCGCGATCATCCACGGCGGCGAACGCAAC
TACATCATGGCCACCATCAGCCTGTACGTGTCGATCTACAACCTGTTCATCAGCCTGTTGCAGATCTTCGGC
ATCGCCGGCGGCGACGACTGA
Translation:
MQEQQYQLNSAVAEQREVSGVLRNTYGLLALTLAFSGLVAYVSQQMRLPYPNVFVVLIGFYGLFFLTVKLRN
SAWGLVSTFALTGFMGYTLGPILNMYLGLPNGGSVITSAFAMTALVFFGLSAYVLTTRKDMSFLSGFITAGF
FVLLGAVLVSLFFQISGLQLAISAGFVLFSSAMILYQTSAIIHGGERNYIMATISLYVSIYNLFISLLQIFG
IAGGDD*
AnnotationID:3655GeneID:3647
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 11:11:38
Gene Name:
Confidence Code:3
GeneProduct:putative 24K membrane protein
Cell Localization:()
Synonyms:yccA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative carrier/transport protein
Functional Category Confidence Code:5
COGs:COG0670
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69584.1|AE016592_3 (AE016788) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 223

 Score =  345 bits (886), Expect = 9e-95
 Identities = 179/223 (80%), Positives = 198/223 (88%), Gaps = 1/223 (0%)

>gb|AAO56811.1| (AE016868) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 223

 Score =  343 bits (880), Expect = 4e-94
 Identities = 178/223 (79%), Positives = 197/223 (88%), Gaps = 1/223 (0%)

>gb|AAG55456.1|AE005287_3 (AE005287) putative carrier/transport protein [Escherichia coli
           O157:H7 EDL933]
          Length = 219

 Score =  223 bits (567), Expect = 9e-58
 Identities = 117/201 (58%), Positives = 141/201 (70%), Gaps = 1/201 (0%)








 
Structural Features:
COG0670, COG0670, Integral membrane protein, interacts with FtsH
CD-Length = 233 residues,  99.1% aligned
Score =  125 bits (316), Expect = 3e-30
Identities = 85/232 (36%), Positives = 119/232 (51%), Gaps = 11/232 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7297




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24439




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33172




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3647_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3647
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5844
                           PA2604_tr
                           translation of PA2604
                           222
                           99.99
                           99.99
                           0
                           1099.0
     

     
     
162887
                           gb|AAG05992.1|AE004689_4
                           (AE004689) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           222
                           99.99
                           99.99
                           0
                           1099.0
     

     
     
162888
                           dbj|BAA02671.1|
                           (D13407) 24K membrane protein [Pseudomonas aeruginosa]
                           222
                           99.99
                           99.99
                           0
                           1099.0
     

     
     
162889
                           gb|AAN69584.1|AE016592_3
                           (AE016788) membrane protein, putative [Pseudomonas putida KT2440]
                           223
                           80.26
                           88.78
                           1
                           888.0
     

     
     
162890
                           gb|AAO56811.1|
                           (AE016868) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           223
                           79.82
                           88.34
                           1
                           882.0
     

     






      

          
GC ORFID: 46649How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2604Glimmer Score: 

          
Start: 2319818Stop: 2320486

          
Length: 669


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2604 translation of PA2604Homolog Bit Score 427.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2822 (ORF: BLASTX 343.0), t_PA2604 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGAACAGCAATATCAGCTGAACTCCGCCGTCGCGGAACAGCGTGAAGTCAGCGGCGTTCTGCGCAAT 
ACCTACGGCCTGCTGGCACTCACCCTGGCCTTCAGCGGCCTGGTGGCCTACGTTTCGCAGCAGATGCGCCTG 
CCCTATCCGAACGTGTTCGTGGTGCTGATCGGCTTCTACGGCCTGTTCTTCCTCACCGTGAAGCTGCGCAAC 
AGCGCCTGGGGGCTGGTCAGCACTTTCGCCCTGACCGGCTTCATGGGCTACACGCTCGGCCCGATCCTCAAC 
ATGTACCTCGGCCTGCCCAACGGCGGCAGCGTCATCACTTCGGCGTTCGCCATGACCGCCCTGGTGTTCTTC 
GGCCTGTCCGCCTATGTGCTGACCACCCGCAAGGACATGAGCTTCCTGTCCGGCTTCATCACCGCCGGCTTC 
TTCGTCCTGCTGGGCGCCGTGCTGGTATCGCTGTTCTTCCAGATCAGTGGCCTGCAACTGGCGATCAGCGCC 
GGCTTCGTCCTGTTCTCCTCGGCGATGATCCTCTACCAGACCAGCGCGATCATCCACGGCGGCGAACGCAAC 
TACATCATGGCCACCATCAGCCTGTACGTGTCGATCTACAACCTGTTCATCAGCCTGTTGCAGATCTTCGGC 
ATCGCCGGCGGCGACGACTGA