ViewGene
Locus Name:
GeneID:
Location:

GeneID:3645
TrivialName: PA14_38910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38910
PAO1 Ortholog Locus:PA1979
Sequence Length:651
Protein Length:216
Start: 3468979
Stop: 3468329
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05367.1|AE004624_6 (AE004624) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 213/216 (98%), Positives = 213/216 (98%)
Sequence:
ATGGATGACCTGCGACCCGCCGGCCCGGCGGAGTACCGCTGGCTGCTCGCCGTGCAGGAGCGCGAGCGGCGC
TTGCTGGCCCAGGCGGTGCATGACGATATCGGCCAGTACCTGACGGGCATCCGCACCCAACTGTTGTTGCTG
CGCTGCACGGCAGGCGCCGGGCAGCCGGCGCTGGCACGCCTGGAGCGCTACTGCCAGGGGCTGGACGACAGC
TTCCGCGCGTTGCTGCGCGGTCTACCGCCGCCGGCCCTGCAACGCCAGTCGCTGGACGAGGCGCTACGCGCC
TGCGTGGCGGACTGGCAGGAAGGCCAGGGCATCGCCTGCGAGCTGCGCCTGGGCGGTCCGCTGCCGCCCCTG
GATGCGGCGGCCGGGACCCATCTCTACCGCCTGTTGCAGGAGGCGCTGAACAACGTCGCCCGGCATGCCGGC
GCCAGCCGCGTGCGGATCCGCCTGCAACGCCGTGGCGGCTTTCTCTACCTGAGCGTACGCGACGACGGTCGC
GGCTGCGCGGCGGACCCGGCACCCGGCTTCGGCCTGGACTCGATGCGCCAGCGCGCGCGCTGCCTGGGCGCT
GAACTGAGCCTGCGCAGCCGTCCCGGACAGGGCCTGGCGTTGCGCCTGCGGATGCCGCTGGAACGCGGCGAC
TGA
Translation:
MDDLRPAGPAEYRWLLAVQERERRLLAQAVHDDIGQYLTGIRTQLLLLRCTAGAGQPALARLERYCQGLDDS
FRALLRGLPPPALQRQSLDEALRACVADWQEGQGIACELRLGGPLPPLDAAAGTHLYRLLQEALNNVARHAG
ASRVRIRLQRRGGFLYLSVRDDGRGCAADPAPGFGLDSMRQRARCLGAELSLRSRPGQGLALRLRMPLERGD
*
AnnotationID:3653GeneID:3645
AnnotatorUID: diggins
Modification Date/Time: 2004-06-24 18:06:56
Gene Name:
Confidence Code:3
GeneProduct:putative sensor kinase
Cell Localization:()
Synonyms:exaD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68279.1|AE016462_5 (AE016784) sensor histidine kinase [Pseudomonas putida KT2440]
          Length = 424

 Score =  191 bits (484), Expect = 3e-48
 Identities = 109/202 (53%), Positives = 127/202 (62%), Gaps = 3/202 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7293




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24435




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32747




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3645_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3645
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5842
                           PA1979_tr
                           translation of PA1979
                           216
                           98.61
                           98.61
                           0
                           1099.0
     

     
     
162883
                           gb|AAG05367.1|AE004624_6
                           (AE004624) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           216
                           98.61
                           98.61
                           0
                           1099.0
     

     
     
162884
                           emb|CAB95009.1|
                           (AJ009858) sensor kinase [Pseudomonas aeruginosa]
                           272
                           78.30
                           78.30
                           56
                           1099.0
     

     
     
162885
                           gb|AAN68279.1|AE016462_5
                           (AE016784) sensor histidine kinase [Pseudomonas putida KT2440]
                           428
                           27.33
                           31.30
                           216
                           480.0
     

     






      

          
GC ORFID: 46647How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1979Glimmer Score: 

          
Start: 1484932Stop: 1485582

          
Length: 651


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1979 translation of PA1979Homolog Bit Score 427.0

          
Other Homologs:  t_PA1979 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATGACCTGCGACCCGCCGGCCCGGCGGAGTACCGCTGGCTGCTCGCCGTGCAGGAGCGCGAGCGGCGC 
TTGCTGGCCCAGGCGGTGCATGACGATATCGGCCAGTACCTGACGGGCATCCGCACCCAACTGTTGTTGCTG 
CGCTGCACGGCAGGCGCCGGGCAGCCGGCGCTGGCACGCCTGGAGCGCTACTGCCAGGGGCTGGACGACAGC 
TTCCGCGCGTTGCTGCGCGGTCTACCGCCGCCGGCCCTGCAACGCCAGTCGCTGGACGAGGCGCTACGCGCC 
TGCGTGGCGGACTGGCAGGAAGGCCAGGGCATCGCCTGCGAGCTGCGCCTGGGCGGTCCGCTGCCGCCCCTG 
GATGCGGCGGCCGGGACCCATCTCTACCGCCTGTTGCAGGAGGCGCTGAACAACGTCGCCCGGCATGCCGGC 
GCCAGCCGCGTGCGGATCCGCCTGCAACGCCGTGGCGGCTTTCTCTACCTGAGCGTACGCGACGACGGTCGC 
GGCTGCGCGGCGGACCCGGCACCCGGCTTCGGCCTGGACTCGATGCGCCAGCGCGCGCGCTGCCTGGGCGCT 
GAACTGAGCCTGCGCAGCCGTCCCGGACAGGGCCTGGCGTTGCGCCTGCGGATGCCGCTGGAACGCGGCGAC 
TGA