ViewGene

Locus Name:
GeneID:
Location:

GeneID:3644
TrivialName: PA14_18080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18080
PAO1 Ortholog Locus:PA3574
Sequence Length:639
Protein Length:212
Start: 1551619
Stop: 1550981
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06962.1|AE004778_6 (AE004778) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 212/212 (100%), Positives = 212/212 (100%)
Sequence:
ATGCGACGCACAAAGGAAGATTCTGAAAAAACCCGTACGGCCATCCTCCTGGCCGCCGAGGAACTGTTCCTG
GAAAAAGGCGTGTCCCATACCAGCCTGGAACAGATCGCCAGGGCCGCCGGGGTGACCCGTGGCGCCGTCTAC
TGGCACTTCCAGAACAAGGCTCACCTGTTCAACGAGATGCTCAACCAGGTACGCCTGCCGCCGGAGCAACTC
ACCGAGCGCCTGTCCGGCTGCGATGGCAGCGACCCGCTGCGCTCGCTCTACGACCTCTGCCTGGAGGCCGTG
CAATCGTTGCTGACTCAGGAGAAGAAGCGCCGCATCCTGACCATCCTGATGCAACGTTGCGAATTCACCGAG
GAACTGCGCGAGGCGCAGGAACGCAACAACGCCTTCGTGCAGATGTTCATCGAACTCTGCGAGCAGTTGTTC
GCCCGCGACGAATGCCGCGTGCGGCTGCATCCGGGCATGACCCCAAGGATCGCCTCGCGCGCCTTGCACGCG
CTGATCCTGGGCCTGTTCAACGACTGGTTGCGCGACCCGCGCCTGTTCGATCCGGATACGGACGCGGAACAC
CTGCTGGAGCCGATGTTCCGTGGCCTGGTGCGCGACTGGGGTCAGGCCAGCTCGGCGCCGTAG
Translation:
MRRTKEDSEKTRTAILLAAEELFLEKGVSHTSLEQIARAAGVTRGAVYWHFQNKAHLFNEMLNQVRLPPEQL
TERLSGCDGSDPLRSLYDLCLEAVQSLLTQEKKRRILTILMQRCEFTEELREAQERNNAFVQMFIELCEQLF
ARDECRVRLHPGMTPRIASRALHALILGLFNDWLRDPRLFDPDTDAEHLLEPMFRGLVRDWGQASSAP*
AnnotationID:3652GeneID:3644
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 07:07:54
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, TetR family
Cell Localization:()
Synonyms:PA3574
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440,COG1309
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAC41578.1| (AL591782) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinorhizobium
           meliloti]
          Length = 216

 Score =  130 bits (328), Expect = 4e-30
 Identities = 76/203 (37%), Positives = 110/203 (54%), Gaps = 1/203 (0%)

>gb|AAN29239.1|AE014341_7 (AE014341) transcriptional regulator, TetR family [Brucella suis
           1330]
          Length = 209

 Score =  121 bits (303), Expect = 3e-27
 Identities = 66/185 (35%), Positives = 108/185 (58%)

>dbj|BAB33940.1| (AP002551) acrAB operon repressor [Escherichia coli O157:H7]
          Length = 215

 Score =  111 bits (278), Expect = 3e-24
 Identities = 64/189 (33%), Positives = 103/189 (54%)

Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 68.5 bits (168), Expect = 1e-12
Identities = 22/47 (46%), Positives = 32/47 (68%)

COG1309, AcrR, Transcriptional regulator [Transcription]
CD-Length = 201 residues,  98.5% aligned
Score = 65.0 bits (156), Expect = 1e-11
Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 3/201 (1%)
Genomic Context:
Comment:
ReferenceID:7291
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24433
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31967
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3644_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3644

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5841 PA3574_tr translation of PA3574 212 99.99 99.99 0 1100.0
162881 gb|AAG06962.1|AE004778_6 (AE004778) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 212 99.99 99.99 0 1100.0
162882 emb|CAE29538.1| (BX572606) transcriptional regulator, TetR family [Rhodopseudomonas palustris CGA009] 221 37.10 47.51 22 305.0
GC ORFID: 46646How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3574Glimmer Score:
Start: 3402317Stop: 3402955
Length: 639
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3574 translation of PA3574Homolog Bit Score 428.0
Other Homologs: t_PA3574 (ORF: GLIMMER)
GC ORF Sequence
ATGCGACGCACAAAGGAAGATTCTGAAAAAACCCGTACGGCCATCCTCCTGGCCGCCGAGGAACTGTTCCTG
GAAAAAGGCGTGTCCCATACCAGCCTGGAACAGATCGCCAGGGCCGCCGGGGTGACCCGTGGCGCCGTCTAC
TGGCACTTCCAGAACAAGGCTCACCTGTTCAACGAGATGCTCAACCAGGTACGCCTGCCGCCGGAGCAACTC
ACCGAGCGCCTGTCCGGCTGCGATGGCAGCGACCCGCTGCGCTCGCTCTACGACCTCTGCCTGGAGGCCGTG
CAATCGTTGCTGACTCAGGAGAAGAAGCGCCGCATCCTGACCATCCTGATGCAACGTTGCGAATTCACCGAG
GAACTGCGCGAGGCGCAGGAACGCAACAACGCCTTCGTGCAGATGTTCATCGAACTCTGCGAGCAGTTGTTC
GCCCGCGACGAATGCCGCGTGCGGCTGCATCCGGGCATGACCCCAAGGATCGCCTCGCGCGCCTTGCACGCG
CTGATCCTGGGCCTGTTCAACGACTGGTTGCGCGACCCGCGCCTGTTCGATCCGGATACGGACGCGGAACAC
CTGCTGGAGCCGATGTTCCGTGGCCTGGTGCGCGACTGGGGTCAGGCCAGCTCGGCGCCGTAG