ViewGene
Locus Name:
GeneID:
Location:

GeneID:3643
TrivialName: PA14_19450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19450
PAO1 Ortholog Locus:PA3453
Sequence Length:666
Protein Length:221
Start: 1681838
Stop: 1682503
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06841.1|AE004766_2 (AE004766) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 220/221 (99%), Positives = 221/221 (100%)
Sequence:
ATGTCCACCGAGCCCAACTCGCCGTTCGTCGACGACCCGCTGAGCGCCGTCGATGCACGGATTCTCGGCAGC
CTCGTCGAGAAGCAGGCGACCACTCCGGAAACCTATCCGCTGACCCTCAATGCCCTGGTCCTGGCCTGCAAC
CAGAAGACCAGCCGCGATCCGGTGATGAACCTCACGCCCGGCCAGGTCGGCCAGAGCCTGCGCCAGCTCGAG
GGGCGCGGCCTGGTCAGGCTGGTGATGGGCAGCCGCGCCGACCGCTGGGAGCACACCCTGGGCAAGGGCCTG
GAATTGGTGGCGCCACAGGTGGCGCTGCTCGGCCTGCTGTTCCTGCGTGGTCCGCAGACCCTCAGCGAACTG
CTCACCCGCAGCAACCGCCTGCACGATTTCGACGACGTCGAGCAGATCCGCCACCACCTGGAACGCCTCGCC
GGCCGTGGCCTGGCCGTGCACCTGGAGCGTCGCGCCGGGCAGCGCGAGGAGCGCTACATGCATCTGCTCGGC
AGCCAGGCCGACCTCGAGGCCGCCGTGGAGGCGATGGGCAGCGACCCGGAACGCGCCGCGCCGGCCGCTCTG
TCGGCCGATGCGGAAGCGCGGATCGCCGAGCTGGAGACGCGCCTGGCGGCGCTGGAGGAGCGCCTGGCCAGG
CTCGAAGGAGGGGCGTGA
Translation:
MSTEPNSPFVDDPLSAVDARILGSLVEKQATTPETYPLTLNALVLACNQKTSRDPVMNLTPGQVGQSLRQLE
GRGLVRLVMGSRADRWEHTLGKGLELVAPQVALLGLLFLRGPQTLSELLTRSNRLHDFDDVEQIRHHLERLA
GRGLAVHLERRAGQREERYMHLLGSQADLEAAVEAMGSDPERAAPAALSADAEARIAELETRLAALEERLAR
LEGGA*
AnnotationID:3651GeneID:3643
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 19:07:13
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3453
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7289




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24431




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32117




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3643_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3643
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5840
                           PA3453_tr
                           translation of PA3453
                           221
                           99.54
                           99.99
                           0
                           1100.0
     

     
     
162858
                           gb|AAG06841.1|AE004766_2
                           (AE004766) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           221
                           99.54
                           99.99
                           0
                           1100.0
     

     
     
162859
                           gb|AAO56188.1|
                           (AE016865) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           231
                           63.63
                           73.16
                           20
                           708.0
     

     
     
162860
                           gb|AAN68054.1|AE016437_11
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           221
                           62.44
                           76.01
                           6
                           679.0
     

     
     
162862
                           gb|AAM39113.1|
                           (AE012081) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           230
                           50.86
                           64.34
                           17
                           522.0
     

     






      

          
GC ORFID: 46645How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3453Glimmer Score: 

          
Start: 3272094Stop: 3271429

          
Length: 666


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3453 translation of PA3453Homolog Bit Score 428.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene146 (ORF: BLASTX 271.0), t_PA3453 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCACCGAGCCCAACTCGCCGTTCGTCGACGACCCGCTGAGCGCCGTCGATGCACGGATTCTCGGCAGC 
CTCGTCGAGAAGCAGGCGACCACTCCGGAAACCTATCCGCTGACCCTCAATGCCCTGGTCCTGGCCTGCAAC 
CAGAAGACCAGCCGCGATCCGGTGATGAACCTCACGCCCGGCCAGGTCGGCCAGAGCCTGCGCCAGCTCGAG 
GGGCGCGGCCTGGTCAGGCTGGTGATGGGCAGCCGCGCCGACCGCTGGGAGCACACCCTGGGCAAGGGCCTG 
GAATTGGTGGCGCCACAGGTGGCGCTGCTCGGCCTGCTGTTCCTGCGTGGTCCGCAGACCCTCAGCGAACTG 
CTCACCCGCAGCAACCGCCTGCACGATTTCGACGACGTCGAGCAGATCCGCCACCACCTGGAACGCCTCGCC 
GGCCGTGGCCTGGCCGTGCACCTGGAGCGTCGCGCCGGGCAGCGCGAGGAGCGCTACATGCATCTGCTCGGC 
AGCCAGGCCGACCTCGAGGCCGCCGTGGAGGCGATGGGCAGCGACCCGGAACGCGCCGCGCCGGCCGCTCTG 
TCGGCCGATGCGGAAGCGCGGATCGCCGAGCTGGAGACGCGCCTGGCGGCGCTGGAGGAGCGCCTGGCCAGG 
CTCGAAGGAGGGGCGTGA