ViewGene

Locus Name:
GeneID:
Location:

GeneID:3642
TrivialName: PA14_54510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54510
PAO1 Ortholog Locus:PA0756
Sequence Length:672
Protein Length:223
Start: 4833545
Stop: 4832874
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04145.1|AE004510_9 (AE004510) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 223/223 (100%), Positives = 223/223 (100%)
Sequence:
ATGCGCATCCTTCTGGTGGAAGATCATCCGCAGCTCGCCGAAAGCGTGGTCCAGGCGCTCAAGGGCGCTGGC
TGGACGGTAGACCTGCTGCAGGACGGGGTGGCCGCCGACCTGGCCCTGGCCAGCGAGGAGTACGCCCTGGCG
ATTCTCGACGTCGGCCTGCCGCGGATGGACGGCTTCGAGGTGCTGGCGCGCCTGCGCGGGCGCGGCAAGACC
TTGCCGGTGCTGATGCTGACTGCGCGCGGCGAGGTGAAGGACCGGGTGCACGGCCTCAATCTCGGCGCCGAC
GACTACCTGGCAAAGCCTTTCGAACTGTCCGAGCTGGAGGCGCGGGTCAAGGCCCTGCTGCGCCGCAGCGTG
CTCGGCGGCGAACAGTTGCAGCGCTGCGGCGCCCTGGTCTACGACCTCGGCACCCGGCGCTTCAGCCTCGAC
GAGCAGCCGCTGACCCTGACCTCGCGGGAACAGGCGGTGCTGGAAGCGATGATCGCCCGTCCGGGGCGGGTG
ATGAGCAAGGAGCAACTGGCCGCCCAGGTCTTCGGCCTGGACGAGGAGGCCAGCGCCGACGCCATCGAGATC
TACGTCCACCGCCTGCGCAAGAAGCTGGAAGGCGGCGCCGTGCGCATCGTCACCTTCCGCGGCCTCGGCTAC
CTGCTGGAGGCGCAGGGTGACTGA
Translation:
MRILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEYALAILDVGLPRMDGFEVLARLRGRGKT
LPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGEQLQRCGALVYDLGTRRFSLD
EQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQVFGLDEEASADAIEIYVHRLRKKLEGGAVRIVTFRGLGY
LLEAQGD*
AnnotationID:3650GeneID:3642
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 13:01:41
Gene Name:
Confidence Code:3
GeneProduct:probable two-component response regulator
Cell Localization:(1) Cytoplasmic
Synonyms:PA0756
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:
Two-component System
Homology:
Structural Features:
COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and 
a winged-helix DNA-binding domain. [Signal transduction mechanisms / Transcription].
     CD-Length = 229 residues, 100.0% aligned
     Score =  198 bits (505), Expect =
Genomic Context:
Downstream gene is a candidate sensor protein.
Comment:
ReferenceID:7287
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24429
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3642

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5831 PA0756_tr translation of PA0756 223 99.99 99.99 0 1100.0
162666 gb|AAG04145.1|AE004510_9 (AE004510) probable two-component response regulator [Pseudomonas aeruginosa PAO1] 223 99.99 99.99 0 1100.0
162667 gb|AAO57687.1| (AE016871) DNA-binding response regulator TctD [Pseudomonas syringae pv. tomato str. DC3000] 223 85.20 91.47 0 933.0
162668 gb|AAN67042.1|AE016333_3 (AE016779) transcriptional regulatory protein TctD [Pseudomonas putida KT2440] 223 84.30 90.58 0 921.0
162669 emb|CAD15438.1| (AL646066) PROBABLE TWO-COMPONENT RESPONSE REGULATOR TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] 231 56.27 73.59 9 625.0
GC ORFID: 46644How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0756Glimmer Score:
Start: 120362Stop: 121033
Length: 672
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0756 translation of PA0756Homolog Bit Score 428.0
Other Homologs: psyr_15may02_Scaffold16_revised_gene2699 (ORF: BLASTX 360.0), psyr_15may02_Scaffold8_revised_gene7577 (ORF: BLASTX 179.0), t_PA4776 (ORF: BLASTX 174.0), t_PA2479 (ORF: BLASTX 172.0), t_PA1179 (ORF: BLASTX 167.0), psyr_15may02_Scaffold10_revised_gene1701 (ORF: BLASTX 165.0), psyr_15may02_Scaffold17_revised_gene2789 (ORF: BLASTX 163.0), t_PA2809 (ORF: BLASTX 163.0), psyr_15may02_Scaffold5_revised_gene6444 (ORF: BLASTX 156.0), t_PA2657 (ORF: BLASTX 152.0), psyr_15may02_Scaffold3_revised_gene4946 (ORF: BLASTX 149.0), t_PA1437 (ORF: BLASTX 145.0), psyr_15may02_Scaffold12_revised_gene2003 (ORF: BLASTX 140.0), t_PA3204 (ORF: BLASTX 136.0), t_PA0463 (ORF: BLASTX 118.0), t_PA0756 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCATCCTTCTGGTGGAAGATCATCCGCAGCTCGCCGAAAGCGTGGTCCAGGCGCTCAAGGGCGCTGGC
TGGACGGTAGACCTGCTGCAGGACGGGGTGGCCGCCGACCTGGCCCTGGCCAGCGAGGAGTACGCCCTGGCG
ATTCTCGACGTCGGCCTGCCGCGGATGGACGGCTTCGAGGTGCTGGCGCGCCTGCGCGGGCGCGGCAAGACC
TTGCCGGTGCTGATGCTGACTGCGCGCGGCGAGGTGAAGGACCGGGTGCACGGCCTCAATCTCGGCGCCGAC
GACTACCTGGCAAAGCCTTTCGAACTGTCCGAGCTGGAGGCGCGGGTCAAGGCCCTGCTGCGCCGCAGCGTG
CTCGGCGGCGAACAGTTGCAGCGCTGCGGCGCCCTGGTCTACGACCTCGGCACCCGGCGCTTCAGCCTCGAC
GAGCAGCCGCTGACCCTGACCTCGCGGGAACAGGCGGTGCTGGAAGCGATGATCGCCCGTCCGGGGCGGGTG
ATGAGCAAGGAGCAACTGGCCGCCCAGGTCTTCGGCCTGGACGAGGAGGCCAGCGCCGACGCCATCGAGATC
TACGTCCACCGCCTGCGCAAGAAGCTGGAAGGCGGCGCCGTGCGCATCGTCACCTTCCGCGGCCTCGGCTAC
CTGCTGGAGGCGCAGGGTGACTGA