ViewGene
Locus Name:
GeneID:
Location:

GeneID:3641
TrivialName: PA14_04820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04820
PAO1 Ortholog Locus:PA0367
Sequence Length:648
Protein Length:215
Start: 425972
Stop: 426619
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03756.1|AE004474_8 (AE004474) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 215/215 (100%), Positives = 215/215 (100%)
Sequence:
ATGGCACCACGCATCAAGACCCGCGATCGCATCGCCCAGGCCAGCCTGGAACTGTTCAACGCCCAGGGCGAG
CGCAGCGTCACCACCAACCATATCGCCACCCACCTGGGTATATCGCCTGGGAACCTCTACTACCACTACCCG
AACAAGCAGGCGATCATCGCCGAGCTGTTCGCCGAGTACGAAAGCCACGTCGAGAGTTTCCTGCGCCTGCCC
GAAGGGCGGGGTCTGACGGTGGACGACAAGACCTTCTACCTGGAAGCGCTACTGGCCGCGATGTGGCGCTAC
CGCTTCCTCCACCGCGACCTCGAGCACCTGCTGGAAAGCGACCCGGAGCTGGCGGCGCGCTACCGCGCCTTC
GCCCAGCGTTGCCTGGTCAACGCCAAGGCGATCTACCGGGGCTTCACCGAGGCCGGCATCCTGCGGATGAAC
GAGACCCAGCTGGAGGCCCTGACCCTCAACGCCTGGATCATCCTCACCTCCTGGGTGCGCTTCCTCTGCACC
ACCCTCGATCTCGACGGCGACCTCAGCGAGGCGCAACTGCGTCGCGGCATCTACCAGGTGCTGGCGCTGGAG
AGCGGGCACATCGAGGCGCAGGCCCAGGATGCGGTGGACGGGATTTCCGAGCGGCTCTACGTGCCGCTCTGA
Translation:
MAPRIKTRDRIAQASLELFNAQGERSVTTNHIATHLGISPGNLYYHYPNKQAIIAELFAEYESHVESFLRLP
EGRGLTVDDKTFYLEALLAAMWRYRFLHRDLEHLLESDPELAARYRAFAQRCLVNAKAIYRGFTEAGILRMN
ETQLEALTLNAWIILTSWVRFLCTTLDLDGDLSEAQLRRGIYQVLALESGHIEAQAQDAVDGISERLYVPL*
AnnotationID:3649GeneID:3641
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 05:05:12
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, TetR family
Cell Localization:()
Synonyms:PA0367
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70684.1|AE016712_2 (AE016793) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 221

 Score =  293 bits (750), Expect = 5e-79
 Identities = 142/214 (66%), Positives = 171/214 (79%)

>gb|AAO53963.1| (AE016857) transcriptional reguator, TetR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 220

 Score =  269 bits (687), Expect = 1e-71
 Identities = 132/215 (61%), Positives = 164/215 (76%)






 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family. 
CD-Length = 47 residues, 100.0% aligned
Score = 50.0 bits (120), Expect = 2e-07
Identities = 19/47 (40%), Positives = 28/47 (59%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7285




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24427




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33702




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3641_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3641
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5830
                           PA0367_tr
                           translation of PA0367
                           215
                           99.99
                           99.99
                           0
                           1103.0
     

     
     
162661
                           gb|AAG03756.1|AE004474_8
                           (AE004474) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           215
                           99.99
                           99.99
                           0
                           1103.0
     

     
     
162662
                           gb|AAN70684.1|AE016712_2
                           (AE016793) transcriptional regulator, TetR family [Pseudomonas putida KT2440]
                           221
                           64.25
                           77.37
                           6
                           750.0
     

     
     
162663
                           gb|AAO53963.1|
                           (AE016857) transcriptional reguator, TetR family [Pseudomonas syringae pv. tomato str. DC3000]
                           220
                           60.00
                           74.54
                           5
                           687.0
     

     
     
162665
                           gb|AAQ60056.1|
                           (AE016918) probable transcriptional regulator, TetR family [Chromobacterium violaceum ATCC 12472]
                           217
                           40.55
                           58.52
                           5
                           427.0
     

     






      

          
GC ORFID: 46643How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0367Glimmer Score: 

          
Start: 6227314Stop: 6227961

          
Length: 648


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0367 translation of PA0367Homolog Bit Score 429.0

          
Other Homologs:  t_PA0367 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCACCACGCATCAAGACCCGCGATCGCATCGCCCAGGCCAGCCTGGAACTGTTCAACGCCCAGGGCGAG 
CGCAGCGTCACCACCAACCATATCGCCACCCACCTGGGTATATCGCCTGGGAACCTCTACTACCACTACCCG 
AACAAGCAGGCGATCATCGCCGAGCTGTTCGCCGAGTACGAAAGCCACGTCGAGAGTTTCCTGCGCCTGCCC 
GAAGGGCGGGGTCTGACGGTGGACGACAAGACCTTCTACCTGGAAGCGCTACTGGCCGCGATGTGGCGCTAC 
CGCTTCCTCCACCGCGACCTCGAGCACCTGCTGGAAAGCGACCCGGAGCTGGCGGCGCGCTACCGCGCCTTC 
GCCCAGCGTTGCCTGGTCAACGCCAAGGCGATCTACCGGGGCTTCACCGAGGCCGGCATCCTGCGGATGAAC 
GAGACCCAGCTGGAGGCCCTGACCCTCAACGCCTGGATCATCCTCACCTCCTGGGTGCGCTTCCTCTGCACC 
ACCCTCGATCTCGACGGCGACCTCAGCGAGGCGCAACTGCGTCGCGGCATCTACCAGGTGCTGGCGCTGGAG 
AGCGGGCACATCGAGGCGCAGGCCCAGGATGCGGTGGACGGGATTTCCGAGCGGCTCTACGTGCCGCTCTGA