ViewGene
Locus Name:
GeneID:
Location:

GeneID:3640
TrivialName: PA14_00140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00140
PAO1 Ortholog Locus:PA0013
Sequence Length:654
Protein Length:217
Start: 15621
Stop: 16274
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03403.1|AE004441_4 (AE004441) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 216/217 (99%), Positives = 216/217 (99%)
Sequence:
ATGTCAGCCTCTTCTCCGGCGGCCTGGCGCGGCACCCTGGCCGGCCTGATCGCCTTCCACATCGTCATCATC
ATCGCCAGCAACTACCTGGTGCAGTTGCCGATCACCCTGTTTGGCTGGCACACCACCTGGGGCGCCTTCAGC
TTTCCGTTCATCTTCCTGGCTACCGACCTCACCGTGCGCTTGCTGGGCAAGGGCCCTGCCCGGCTGGTCATC
GCCCGGGTCATGATCCCGGCGTTGATCGCCTCCTACGTGGTCTCGGTGTTGTTCCAGGAAGCGGCGTTCCGT
GGTTTCTCCGCGCTGCTCGAGTTCAACACCTTCGTCGCACGGATCTCCCTGGCAAGCTTCCTCGCCTATGTG
CTCGGGCAGATCCTCGACATCCAGGTATTCGACCGCCTCCGTCGTTCCCGGCACTGGTGGACCGCGCCAGTC
GCCTCGACCATCCTCGGCAACCTGCTGGACACCTTCACCTTCTTCTTCGTGGCGTTCTGGCGCAGCGACAAT
CCGTTCATGGCGCAGCACTGGGTGGAAATCGCCACGGTGGACTACGGAGTGAAGCTGAGCATCAGCCTTCTG
CTGTTCGTGCCGCTCTACGGCATGCTACTCAACGGCATCCTGAAGATGCTGCCGGGGCGGCCGCAGAGCAAC
GCTTGA
Translation:
MSASSPAAWRGTLAGLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVI
ARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRRSRHWWTAPV
ASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFVPLYGMLLNGILKMLPGRPQSN
A*
AnnotationID:3648GeneID:3640
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 11:11:27
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA0013
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL22439.1| (AE008865) putative integral membrane protein [Salmonella
           typhimurium LT2]
          Length = 221

 Score =  267 bits (682), Expect = 4e-71
 Identities = 127/199 (63%), Positives = 159/199 (79%)

>gb|AAO71414.1| (AE016847) putative membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 221

 Score =  267 bits (682), Expect = 4e-71
 Identities = 127/199 (63%), Positives = 159/199 (79%)

>emb|CAD08051.1| (AL627281) putative membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 221

 Score =  267 bits (682), Expect = 4e-71
 Identities = 127/199 (63%), Positives = 159/199 (79%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7283




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24425




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33377




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3640_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3640
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5829
                           PA0013_tr
                           translation of PA0013
                           217
                           99.53
                           99.53
                           0
                           1104.0
     

     
     
162636
                           gb|AAG03403.1|AE004441_4
                           (AE004441) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           217
                           99.53
                           99.53
                           0
                           1104.0
     

     
     
162640
                           dbj|BAC61267.1|
                           (AP005083) conserved hypothetical protein [Vibrio parahaemolyticus]
                           222
                           59.90
                           73.87
                           5
                           679.0
     

     
     
162638
                           gb|AAO09438.1|AE016800_43
                           (AE016800) Conserved hypothetical protein [Vibrio vulnificus CMCP6]
                           223
                           59.64
                           73.09
                           6
                           679.0
     

     
     
162643
                           emb|CAD08051.1|
                           (AL627281) putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi]
                           221
                           58.37
                           74.66
                           4
                           675.0
     

     






      

          
GC ORFID: 46642How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0013Glimmer Score: 

          
Start: 5816958Stop: 5817611

          
Length: 654


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0013 translation of PA0013Homolog Bit Score 429.0

          
Other Homologs:  t_PA0013 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCAGCCTCTTCTCCGGCGGCCTGGCGCGGCACCCTGGCCGGCCTGATCGCCTTCCACATCGTCATCATC 
ATCGCCAGCAACTACCTGGTGCAGTTGCCGATCACCCTGTTTGGCTGGCACACCACCTGGGGCGCCTTCAGC 
TTTCCGTTCATCTTCCTGGCTACCGACCTCACCGTGCGCTTGCTGGGCAAGGGCCCTGCCCGGCTGGTCATC 
GCCCGGGTCATGATCCCGGCGTTGATCGCCTCCTACGTGGTCTCGGTGTTGTTCCAGGAAGCGGCGTTCCGT 
GGTTTCTCCGCGCTGCTCGAGTTCAACACCTTCGTCGCACGGATCTCCCTGGCAAGCTTCCTCGCCTATGTG 
CTCGGGCAGATCCTCGACATCCAGGTATTCGACCGCCTCCGTCGTTCCCGGCACTGGTGGACCGCGCCAGTC 
GCCTCGACCATCCTCGGCAACCTGCTGGACACCTTCACCTTCTTCTTCGTGGCGTTCTGGCGCAGCGACAAT 
CCGTTCATGGCGCAGCACTGGGTGGAAATCGCCACGGTGGACTACGGAGTGAAGCTGAGCATCAGCCTTCTG 
CTGTTCGTGCCGCTCTACGGCATGCTACTCAACGGCATCCTGAAGATGCTGCCGGGGCGGCCGCAGAGCAAC 
GCTTGA