ViewGene
Locus Name:
GeneID:
Location:

GeneID:3638
TrivialName: PA14_66090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66090
PAO1 Ortholog Locus:PA4998
Sequence Length:651
Protein Length:216
Start: 5887049
Stop: 5887699
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08383.1|AE004912_9 (AE004912) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 215/216 (99%), Positives = 215/216 (99%)
Sequence:
ATGCGAGTCATAGACTACCCCTCCTACTTGCAGTTGCGTGACAACGCAGAAGTGCTGGAAGCCGATGGTCAT
GGGGACAAGGTACTGCGTCTGCGCGACGGGTCCTTCCTCAAGCTGTTTCGCCGCAAGCGCCTGATTTCCTCC
GCAGCCCTGTTCCCCTATGCGGAGCGCTTCGCCCGCAATGCCAGCGAACTGGCGCGGCGCGGCATCGTCTGC
CCGAAGGTGCTGGACGTACTGCGGATCCCACATATCCAGCGCGACGCGGTGCACTACGAGCCGCTACCGGGG
CAGACCCTCCGCCAACTCGACCGCAACGACCCGGAGTGCGGCGATACAGTCCGGACGCAACTGGGCGAGCTG
ATCGCCGCGCTGCACGCCAAGGGGGTGTACTTCCGCTCGCTGCACCTGGGCAACGTGGTGCGCACGCCGGAA
GGCCGGATGGGCCTGATCGACATCGCCGACCTGCGGGTCCAGCGCTCGGCGCTCAGCGCCGCCCAACGCATT
CGCAACTTCAAGCACCTGCTGCGCTACGAACAGGATCGAACCTGGTTCCTCGACGACAGCGAGCACCTGGTG
CTCAAGGCCTATCTCCGCAGCAGCCAGGTCCACTGGACACTCGAGCAGCTCCTCAAGCAACTGCAACTGGAT
TGA
Translation:
MRVIDYPSYLQLRDNAEVLEADGHGDKVLRLRDGSFLKLFRRKRLISSAALFPYAERFARNASELARRGIVC
PKVLDVLRIPHIQRDAVHYEPLPGQTLRQLDRNDPECGDTVRTQLGELIAALHAKGVYFRSLHLGNVVRTPE
GRMGLIDIADLRVQRSALSAAQRIRNFKHLLRYEQDRTWFLDDSEHLVLKAYLRSSQVHWTLEQLLKQLQLD
*
AnnotationID:3646GeneID:3638
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 09:09:08
Gene Name:
Confidence Code:3
GeneProduct:putative toluene tolerance protein
Cell Localization:()
Synonyms:PA4998
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58413.1| (AE016874) toluene tolerance protein, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 226

 Score =  238 bits (607), Expect = 2e-62
 Identities = 120/202 (59%), Positives = 147/202 (72%), Gaps = 1/202 (0%)

>gb|AAN70504.1|AE016692_3 (AE016792) toluene tolerance protein [Pseudomonas putida KT2440]
          Length = 224

 Score =  168 bits (426), Expect = 2e-41
 Identities = 93/167 (55%), Positives = 115/167 (68%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7279




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24421




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3638
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5827
                           PA4998_tr
                           translation of PA4998
                           216
                           99.53
                           99.53
                           0
                           1103.0
     

     
     
162622
                           gb|AAG08383.1|AE004912_9
                           (AE004912) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           216
                           99.53
                           99.53
                           0
                           1103.0
     

     
     
162623
                           gb|AAO58413.1|
                           (AE016874) toluene tolerance protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           230
                           53.47
                           66.08
                           18
                           604.0
     

     
     
162624
                           gb|AAN70504.1|AE016692_3
                           (AE016792) toluene tolerance protein [Pseudomonas putida KT2440]
                           249
                           38.95
                           50.20
                           58
                           414.0
     

     
     
162625
                           gb|AAD17955.1|
                           (AF106001) toluene tolerance protein Ttg8 [Pseudomonas putida]
                           249
                           38.15
                           49.79
                           58
                           408.0
     

     






      

          
GC ORFID: 46640How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4998Glimmer Score: 

          
Start: 5150732Stop: 5151382

          
Length: 651


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4998 translation of PA4998Homolog Bit Score 429.0

          
Other Homologs:  t_PA4998 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGAGTCATAGACTACCCCTCCTACTTGCAGTTGCGTGACAACGCAGAAGTGCTGGAAGCCGATGGTCAT 
GGGGACAAGGTACTGCGTCTGCGCGACGGGTCCTTCCTCAAGCTGTTTCGCCGCAAGCGCCTGATTTCCTCC 
GCAGCCCTGTTCCCCTATGCGGAGCGCTTCGCCCGCAATGCCAGCGAACTGGCGCGGCGCGGCATCGTCTGC 
CCGAAGGTGCTGGACGTACTGCGGATCCCACATATCCAGCGCGACGCGGTGCACTACGAGCCGCTACCGGGG 
CAGACCCTCCGCCAACTCGACCGCAACGACCCGGAGTGCGGCGATACAGTCCGGACGCAACTGGGCGAGCTG 
ATCGCCGCGCTGCACGCCAAGGGGGTGTACTTCCGCTCGCTGCACCTGGGCAACGTGGTGCGCACGCCGGAA 
GGCCGGATGGGCCTGATCGACATCGCCGACCTGCGGGTCCAGCGCTCGGCGCTCAGCGCCGCCCAACGCATT 
CGCAACTTCAAGCACCTGCTGCGCTACGAACAGGATCGAACCTGGTTCCTCGACGACAGCGAGCACCTGGTG 
CTCAAGGCCTATCTCCGCAGCAGCCAGGTCCACTGGACACTCGAGCAGCTCCTCAAGCAACTGCAACTGGAT 
TGA