ViewGene
Locus Name:
GeneID:
Location:

GeneID:3637
TrivialName: PA14_57200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57200
PAO1 Ortholog Locus:PA4401
Sequence Length:636
Protein Length:211
Start: 5095939
Stop: 5095304
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07789.1|AE004855_11 (AE004855) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
Identities = 210/211 (99%), Positives = 210/211 (99%)
Sequence:
ATGGCCCTGACCATCGTGATTGGCAATCGCAATGACTCGTCCTGGTCGCTGCGGGGCTGGCTGGCCCTGCGC
ATGAGCGGGGCGGCGTTCGACGAGATCCTCGTCCCGCTGGGGCGGCCCGATACCCGGGAGCGGATCCTGCAA
TATTCGCCGACCGGCAAGGTGCCCTTGCTGAAAAGCGAGGATGGCGACATCTGGGATTCCCTGGCCATCGCC
GAGTACCTCGCCGAGCGCTTCCCCGAGGCCCACCTGTGGCCGCGCGGCGAGGCGGCGCGGGCGCTGGCCCGT
TCGGTCTGCGCGGAAATGCACAGCGGTTTCGCCGCGTTGCGCGGCGAGCTGCCGATGGACCTGCGGCGCCAG
CAGCCATTGGTGGAATTGTCCGAGGCGACACGACAGGATATTCAACGTATCTGCGAAGCCTGGGCGGATTGC
CGGCGGCGCTTCGGCCAGGACGGTCCGTTCCTGTTCGGCCACGCCAGCCTGGCGGATGCGTTCTACGCACCG
GTGGCGGCGCGTTTCCGCAGTTATGCGGTGGAATTGCCGGATATCGCCCGGACCTATGTCGAGACGATTTAT
CAGTGGCCTGCGTTCCGCGCCTGGTACGACGCGGCATTGCGCGAGCAGGCCGGTAGTTGA
Translation:
MALTIVIGNRNDSSWSLRGWLALRMSGAAFDEILVPLGRPDTRERILQYSPTGKVPLLKSEDGDIWDSLAIA
EYLAERFPEAHLWPRGEAARALARSVCAEMHSGFAALRGELPMDLRRQQPLVELSEATRQDIQRICEAWADC
RRRFGQDGPFLFGHASLADAFYAPVAARFRSYAVELPDIARTYVETIYQWPAFRAWYDAALREQAGS*
AnnotationID:3645GeneID:3637
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 14:02:12
Gene Name:
Confidence Code:3
GeneProduct:putative glutathione S-transferase
Cell Localization:()
Synonyms:PA4401
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0625,pfam02798
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57847.1| (AE016871) glutathione S-transferase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 260

 Score =  246 bits (629), Expect = 5e-65
 Identities = 120/200 (60%), Positives = 144/200 (72%)

>gb|AAN66970.1|AE016325_6 (AE016779) glutathione S-transferase family protein [Pseudomonas
           putida KT2440]
          Length = 210

 Score =  239 bits (610), Expect = 8e-63
 Identities = 120/208 (57%), Positives = 148/208 (71%)

>emb|CAE30576.1| (BX640437) putative glutathione S-transferase [Bordetella
           bronchiseptica]
          Length = 219

 Score =  198 bits (503), Expect = 2e-50
 Identities = 101/204 (49%), Positives = 131/204 (64%), Gaps = 1/204 (0%)







 
Structural Features:
COG0625, Gst, Glutathione S-transferase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 211 residues,  94.3% aligned
Score = 91.0 bits (225), Expect = 2e-19
Identities = 58/206 (28%), Positives = 77/206 (37%), Gaps = 12/206 (5%)

pfam02798, GST_N, Glutathione S-transferase, N-terminal domain.
CD-Length = 74 residues,  90.5% aligned
Score = 48.0 bits (114), Expect = 2e-06
Identities = 20/67 (29%), Positives = 33/67 (49%)







   
Genomic Context:






   
Comment:


















    ReferenceID:7277




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24419




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:27800




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3637_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3637
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5826
                           PA4401_tr
                           translation of PA4401
                           211
                           99.52
                           99.52
                           0
                           1102.0
     

     
     
162600
                           gb|AAG07789.1|AE004855_11
                           (AE004855) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
                           211
                           99.52
                           99.52
                           0
                           1102.0
     

     
     
162602
                           gb|AAN66970.1|AE016325_6
                           (AE016779) glutathione S-transferase family protein [Pseudomonas putida KT2440]
                           211
                           56.87
                           70.14
                           1
                           609.0
     

     
     
162603
                           emb|CAE28600.1|
                           (BX572603) probable glutathione S-transferase [Rhodopseudomonas palustris CGA009]
                           219
                           55.70
                           67.57
                           9
                           592.0
     

     
     
162610
                           gb|AAK24455.1|
                           (AE005917) glutathione S-transferase family protein [Caulobacter crescentus CB15]
                           217
                           48.84
                           59.90
                           14
                           470.0
     

     






      

          
GC ORFID: 46639How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4401Glimmer Score: 

          
Start: 4359615Stop: 4358980

          
Length: 636


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4401 translation of PA4401Homolog Bit Score 429.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1138 (ORF: BLASTX 254.0), t_PA4401 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCCTGACCATCGTGATTGGCAATCGCAATGACTCGTCCTGGTCGCTGCGGGGCTGGCTGGCCCTGCGC 
ATGAGCGGGGCGGCGTTCGACGAGATCCTCGTCCCGCTGGGGCGGCCCGATACCCGGGAGCGGATCCTGCAA 
TATTCGCCGACCGGCAAGGTGCCCTTGCTGAAAAGCGAGGATGGCGACATCTGGGATTCCCTGGCCATCGCC 
GAGTACCTCGCCGAGCGCTTCCCCGAGGCCCACCTGTGGCCGCGCGGCGAGGCGGCGCGGGCGCTGGCCCGT 
TCGGTCTGCGCGGAAATGCACAGCGGTTTCGCCGCGTTGCGCGGCGAGCTGCCGATGGACCTGCGGCGCCAG 
CAGCCATTGGTGGAATTGTCCGAGGCGACACGACAGGATATTCAACGTATCTGCGAAGCCTGGGCGGATTGC 
CGGCGGCGCTTCGGCCAGGACGGTCCGTTCCTGTTCGGCCACGCCAGCCTGGCGGATGCGTTCTACGCACCG 
GTGGCGGCGCGTTTCCGCAGTTATGCGGTGGAATTGCCGGATATCGCCCGGACCTATGTCGAGACGATTTAT 
CAGTGGCCTGCGTTCCGCGCCTGGTACGACGCGGCATTGCGCGAGCAGGCCGGTAGTTGA