ViewGene
Locus Name:
GeneID:
Location:

GeneID:3636
TrivialName: PA14_12700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12700
PAO1 Ortholog Locus:PA3955
Sequence Length:657
Protein Length:218
Start: 1089678
Stop: 1089022
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07342.1|AE004813_9 (AE004813) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 216/218 (99%), Positives = 217/218 (99%)
Sequence:
ATGAATCCTCTGCTGCCGCTGCGTGACGCCTGGTTCTTCTTCACCCGCCACCTGACCACCCTGGTGCCGCTC
TGCCTGCCCTGGATATTCCTCGAAAGCCTGCTCCAGCAGCAGATCGACGAAGCCGTCGGCCCCCAGCAGATG
GGCGCCTGGAGCCTGGTCGCCGGACTGCTCTTCTACCCGCTCTACACCGCAGCCCTGATCCTGTTCATGGAC
GCGCGCGGGCGCGACGAGCGGCCTCGCGTCGGCCAGCTGTGGAGCGCCGCGCTGCGCCTGTGGCCAGCCTTC
GCGCTACTCGCGGCGCTGACTTCGCTGCTGATCGTGCTCGGCCTGTCGCTGCTGATCCTGCCGGGCATCTTC
GTCATGGTGAAGCTGGCCTTCGCCGAATTCTGCCTGGTGCTGCGCGGCCGTAGTCCGCTGCAGGCGCTGCGG
GAAAGCTTCGAGTTCACCCGTGGGCGATTCTTCCTGATCCTCGCCTGTTCGCTGGTGATCCTGCTGCCGGTC
TGGAGCCTGGAAGCCTGGCTCGCCGATTCGGCCGGCGACGCCGTCGTGCTGCGGGTCGCCCTGCATACGCTC
AGCGGGTTCTTCCAGCTGCTGTTGACCATCGTCGCCTTCCGCATCTACAGCCTCGGTCCGGCGCCACGCAAC
GGGATGTGA
Translation:
MNPLLPLRDAWFFFTRHLTTLVPLCLPWIFLESLLQQQIDEAVGPQQMGAWSLVAGLLFYPLYTAALILFMD
ARGRDERPRVGQLWSAALRLWPAFALLAALTSLLIVLGLSLLILPGIFVMVKLAFAEFCLVLRGRSPLQALR
ESFEFTRGRFFLILACSLVILLPVWSLEAWLADSAGDAVVLRVALHTLSGFFQLLLTIVAFRIYSLGPAPRN
GM*
AnnotationID:3644GeneID:3636
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 16:04:16
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3955
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06790
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|26899 pfam06790, UPF0259, Uncharacterised protein family (UPF0259) Length = 248
Score = 38.7 bits (90), Expect = 0.001
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 11/129 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7275




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24417




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3636
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5825
                           PA3955_tr
                           translation of PA3955
                           218
                           99.08
                           99.54
                           0
                           1104.0
     

     
     
162597
                           gb|AAG07342.1|AE004813_9
                           (AE004813) hypothetical protein PA3955 [Pseudomonas aeruginosa PAO1]
                           218
                           99.08
                           99.54
                           0
                           1104.0
     

     
     
162598
                           gb|AAO58114.1|
                           (AE016872) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           222
                           47.74
                           66.66
                           6
                           511.0
     

     
     
162599
                           gb|AAN70341.1|AE016676_1
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           225
                           43.55
                           63.11
                           14
                           479.0
     

     






      

          
GC ORFID: 46638How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3955Glimmer Score: 

          
Start: 3864260Stop: 3864916

          
Length: 657


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3955 translation of PA3955Homolog Bit Score 429.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5670 (ORF: BLASTX 187.0), t_PA3955 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCCTCTGCTGCCGCTGCGTGACGCCTGGTTCTTCTTCACCCGCCACCTGACCACCCTGGTGCCGCTC 
TGCCTGCCCTGGATATTCCTCGAAAGCCTGCTCCAGCAGCAGATCGACGAAGCCGTCGGCCCCCAGCAGATG 
GGCGCCTGGAGCCTGGTCGCCGGACTGCTCTTCTACCCGCTCTACACCGCAGCCCTGATCCTGTTCATGGAC 
GCGCGCGGGCGCGACGAGCGGCCTCGCGTCGGCCAGCTGTGGAGCGCCGCGCTGCGCCTGTGGCCAGCCTTC 
GCGCTACTCGCGGCGCTGACTTCGCTGCTGATCGTGCTCGGCCTGTCGCTGCTGATCCTGCCGGGCATCTTC 
GTCATGGTGAAGCTGGCCTTCGCCGAATTCTGCCTGGTGCTGCGCGGCCGTAGTCCGCTGCAGGCGCTGCGG 
GAAAGCTTCGAGTTCACCCGTGGGCGATTCTTCCTGATCCTCGCCTGTTCGCTGGTGATCCTGCTGCCGGTC 
TGGAGCCTGGAAGCCTGGCTCGCCGATTCGGCCGGCGACGCCGTCGTGCTGCGGGTCGCCCTGCATACGCTC 
AGCGGGTTCTTCCAGCTGCTGTTGACCATCGTCGCCTTCCGCATCTACAGCCTCGGTCCGGCGCCACGCAAC 
GGGATGTGA