ViewGene

Locus Name:
GeneID:
Location:

GeneID:3635
TrivialName: PA14_16020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16020
PAO1 Ortholog Locus:PA3740
Sequence Length:687
Protein Length:228
Start: 1364329
Stop: 1363643
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07127.1|AE004793_4 (AE004793) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 227/228 (99%), Positives = 228/228 (100%)
Sequence:
ATGACCATGTCCAATCAACAACATTCCCGCCTGGGCCAGATCCTGATCAACAAGGGGCTGATTAGCGCCGCC
CAACTGGACGCCGCGATCCAGGCGCAGTTGAGCAACCACAAGCGCCTGGGCGAAACCCTGATCGAGCAGGGC
CTGCTGAGCGAACGGCAACTGAAGAAGGCGCTGAAGAAGCAGACCAACCTGCGCCTGGCCGCGACCCTGGTC
GCCGCCCTGCTCAGTCCGTTCCAGATGGCCAGCGCCGACATCCAGCGCATGCAGCCGCCAGCGGCCATGAGC
CGCCAGGAATTGCCGAAGAACCTGCGTCCGCTGACCGACGTCGAGATGAGCAACGTCAACGCCCAGGGCCTC
AACGAAAGCCTCGAGGGCCTGTTCCTGAAGGCCGAGGGCGGCGACGGCCTGGCCGCGGTGAAGCAACTGGCG
AAGCTGGTGATGCCGGTGCTCGACAGCCTGGAGGCGGAAACCTCGATGAGCGACGTTCGCTACGAAACCGGC
AAGACGCAAAGCACGCTCAACCCCGACGGCTCGGTCAACCTGCGCCTGCCGAGCAGTATCGGCGAGGTGCGC
TTCGACAATATCCGCATTGCCGGCGCGCCGCGCGAGCAGACGTTCGGCAGTGTCAGCCTGCAACAGATCGAC
CTGTCCCAGGCTTCCCTGAAGATCAGCCTGCGGCCCTGA
Translation:
MTMSNQQHSRLGQILINKGLISAAQLDAAIQAQLSNHKRLGETLIEQGLLSERQLKKALKKQTNLRLAATLV
AALLSPFQMASADIQRMQPPAAMSRQELPKNLRPLTDVEMSNVNAQGLNESLEGLFLKAEGGDGLAAVKQLA
KLVMPVLDSLEAETSMSDVRYETGKTQSTLNPDGSVNLRLPSSIGEVRFDNIRIAGAPREQTFGSVSLQQID
LSQASLKISLRP*
AnnotationID:3643GeneID:3635
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 08:08:43
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3740
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:7273
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24415
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3635

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5824 PA3740_tr translation of PA3740 228 99.56 99.99 0 1102.0
162596 gb|AAG07127.1|AE004793_4 (AE004793) hypothetical protein PA3740 [Pseudomonas aeruginosa PAO1] 228 99.56 99.99 0 1102.0
GC ORFID: 46637How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3740Glimmer Score:
Start: 3589608Stop: 3590294
Length: 687
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3740 translation of PA3740Homolog Bit Score 429.0
Other Homologs: t_PA3740 (ORF: GLIMMER)
GC ORF Sequence
ATGACCATGTCCAATCAACAACATTCCCGCCTGGGCCAGATCCTGATCAACAAGGGGCTGATTAGCGCCGCC
CAACTGGACGCCGCGATCCAGGCGCAGTTGAGCAACCACAAGCGCCTGGGCGAAACCCTGATCGAGCAGGGC
CTGCTGAGCGAACGGCAACTGAAGAAGGCGCTGAAGAAGCAGACCAACCTGCGCCTGGCCGCGACCCTGGTC
GCCGCCCTGCTCAGTCCGTTCCAGATGGCCAGCGCCGACATCCAGCGCATGCAGCCGCCAGCGGCCATGAGC
CGCCAGGAATTGCCGAAGAACCTGCGTCCGCTGACCGACGTCGAGATGAGCAACGTCAACGCCCAGGGCCTC
AACGAAAGCCTCGAGGGCCTGTTCCTGAAGGCCGAGGGCGGCGACGGCCTGGCCGCGGTGAAGCAACTGGCG
AAGCTGGTGATGCCGGTGCTCGACAGCCTGGAGGCGGAAACCTCGATGAGCGACGTTCGCTACGAAACCGGC
AAGACGCAAAGCACGCTCAACCCCGACGGCTCGGTCAACCTGCGCCTGCCGAGCAGTATCGGCGAGGTGCGC
TTCGACAATATCCGCATTGCCGGCGCGCCGCGCGAGCAGACGTTCGGCAGTGTCAGCCTGCAACAGATCGAC
CTGTCCCAGGCTTCCCTGAAGATCAGCCTGCGGCCCTGA