ViewGene
Locus Name:
GeneID:
Location:

GeneID:3633
TrivialName: PA14_19490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19490
PAO1 Ortholog Locus:PA3450
Sequence Length:639
Protein Length:212
Start: 1684916
Stop: 1685554
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06838.1|AE004765_11 (AE004765) probable antioxidant protein [Pseudomonas aeruginosa PAO1]
Identities = 210/212 (99%), Positives = 212/212 (100%)
Sequence:
ATGAGCCTCAGACTCGGCGACATCGCCCCCGATTTCGAACAGGATTCCAGCGAAGGGCGCATCCGCCTCCAC
GAATGGCTGGGCGACAGCTGGGGCGTGCTGTTCTCCCACCCGGCCGACTTCACCCCGGTGTGCACCACCGAG
CTGGGCTTCACCGCCAAGCTCAAGGACCAGTTCGCCCAGCGCGGGGTCAAGGTCCTGGCGCTGTCGGTGGAC
CCGGTGGACTCGCACCTGAAGTGGATCGACGATATCAACGAGACCCAGGACACCCGGGTCAACTTCCCGATC
ATCGCCGACGCCGATCGCAAGGTCTCCGAACTCTACGACCTGATCCACCCGAACGCCAACGACACGCTGACC
GTGCGTTCGCTGTTCATCATCGACCCGAACAAGAAGGTGCGCCTGATCATCACCTACCCGGCGAGCACCGGG
CGCAACTTCAACGAGATCCTCCGGGTGATCGATTCGCTGCAACTGACCGACGAGCACAAGGTCGCCACGCCG
GCCAACTGGGAGGACGGCGACGAGGTAGTGATCGTGCCTTCGCTGAAGGACGAGGAAGAGATCAAGCGGCGT
TTCCCCAAAGGCTACCGCGCGGTGAAGCCCTACCTGCGCCTGACGCCCCAGCCCAACCGCTGA
Translation:
MSLRLGDIAPDFEQDSSEGRIRLHEWLGDSWGVLFSHPADFTPVCTTELGFTAKLKDQFAQRGVKVLALSVD
PVDSHLKWIDDINETQDTRVNFPIIADADRKVSELYDLIHPNANDTLTVRSLFIIDPNKKVRLIITYPASTG
RNFNEILRVIDSLQLTDEHKVATPANWEDGDEVVIVPSLKDEEEIKRRFPKGYRAVKPYLRLTPQPNR*
AnnotationID:3641GeneID:3633
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 18:06:34
Gene Name:
Confidence Code:3
GeneProduct:putative thiol-specific antioxidant protein
Cell Localization:()
Synonyms:lsfA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:putative peroxiredoxin
Functional Category Confidence Code:5
COGs:pfam00578,COG0450,COG1225
Secondary Functional Category(ies):Posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC00970.1| (AB086390) thiol-specific antioxidant protein [Pseudomonas putida]
          Length = 212

 Score =  395 bits (1016), Expect = e-110
 Identities = 189/212 (89%), Positives = 203/212 (95%)

>gb|AAC31902.1| (AF075709) LsfA [Pseudomonas putida]
          Length = 212

 Score =  394 bits (1011), Expect = e-109
 Identities = 190/212 (89%), Positives = 202/212 (95%)

>gb|AAO58743.1| (AE016875) antioxidant, AhpC/Tsa family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 212

 Score =  392 bits (1006), Expect = e-108
 Identities = 186/212 (87%), Positives = 203/212 (95%)






 
Structural Features:
pfam00578, AhpC-TSA, AhpC/TSA family.
CD-Length = 145 residues, 100.0% aligned
Score =  144 bits (364), Expect = 8e-36
Identities = 60/150 (40%), Positives = 87/150 (58%), Gaps = 7/150 (4%)

COG0450, AhpC, Peroxiredoxin 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 194 residues, 100.0% aligned
Score =  227 bits (580), Expect = 8e-61
Identities = 81/198 (40%), Positives = 113/198 (57%), Gaps = 10/198 (5%)

COG1225, Bcp, Peroxiredoxin 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 157 residues,  98.7% aligned
Score =  105 bits (264), Expect = 3e-24
Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 13/163 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7269




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24411




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32119




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3633_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3633
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5822
                           PA3450_tr
                           translation of PA3450
                           212
                           99.05
                           99.99
                           0
                           1102.0
     

     
     
162444
                           gb|AAG06838.1|AE004765_11
                           (AE004765) probable antioxidant protein [Pseudomonas aeruginosa PAO1]
                           212
                           99.05
                           99.99
                           0
                           1102.0
     

     
     
162445
                           gb|AAN65867.1|AE016215_2
                           (AE016774) antioxidant protein LsfA [Pseudomonas putida KT2440]
                           212
                           91.03
                           96.22
                           0
                           1028.0
     

     
     
162447
                           gb|AAC31902.1|
                           (AF075709) LsfA [Pseudomonas putida]
                           212
                           89.62
                           95.28
                           0
                           1011.0
     

     
     
162446
                           dbj|BAC00970.1|
                           (AB086390) thiol-specific antioxidant protein [Pseudomonas putida]
                           212
                           89.15
                           95.75
                           0
                           1016.0
     

     






      

          
GC ORFID: 46635How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3450Glimmer Score: 

          
Start: 3269016Stop: 3268378

          
Length: 639


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3450 translation of PA3450Homolog Bit Score 429.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6499 (ORF: BLASTX 393.0), t_PA3450 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTCAGACTCGGCGACATCGCCCCCGATTTCGAACAGGATTCCAGCGAAGGGCGCATCCGCCTCCAC 
GAATGGCTGGGCGACAGCTGGGGCGTGCTGTTCTCCCACCCGGCCGACTTCACCCCGGTGTGCACCACCGAG 
CTGGGCTTCACCGCCAAGCTCAAGGACCAGTTCGCCCAGCGCGGGGTCAAGGTCCTGGCGCTGTCGGTGGAC 
CCGGTGGACTCGCACCTGAAGTGGATCGACGATATCAACGAGACCCAGGACACCCGGGTCAACTTCCCGATC 
ATCGCCGACGCCGATCGCAAGGTCTCCGAACTCTACGACCTGATCCACCCGAACGCCAACGACACGCTGACC 
GTGCGTTCGCTGTTCATCATCGACCCGAACAAGAAGGTGCGCCTGATCATCACCTACCCGGCGAGCACCGGG 
CGCAACTTCAACGAGATCCTCCGGGTGATCGATTCGCTGCAACTGACCGACGAGCACAAGGTCGCCACGCCG 
GCCAACTGGGAGGACGGCGACGAGGTAGTGATCGTGCCTTCGCTGAAGGACGAGGAAGAGATCAAGCGGCGT 
TTCCCCAAAGGCTACCGCGCGGTGAAGCCCTACCTGCGCCTGACGCCCCAGCCCAACCGCTGA