ViewGene
Locus Name:
GeneID:
Location:

GeneID:3632
TrivialName: PA14_38640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38640
PAO1 Ortholog Locus:PA2000
Sequence Length:657
Protein Length:218
Start: 3447928
Stop: 3447272
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05388.1|AE004626_7 (AE004626) probable CoA transferase, subunit B [Pseudomonas aeruginosa PAO1]
Identities = 218/218 (100%), Positives = 218/218 (100%)
Sequence:
ATGGCACTTACCCGCGAACAGATGGCGCAGCGCGTGGCGCGCGAATTGAAGGACGGCTACTACGTCAACCTC
GGCATTGGCATCCCGACCCTGGTGGCCAACTACGTGCCGGAGGGCATCGACGTCATGCTCCAGTCGGAGAAC
GGCCTGCTCGGCATGGGCGCGTTCCCCAGCGAGGCGGAAGTCGACGCCGACATGATCAACGCCGGCAAGCAG
ACCGTGACCGCTCGCGTCGGCGCGTCGATCTTCGACTCGGCGCAATCCTTCGCCATGATCCGTGGCGGCCAC
GTCGACCTCACCGTGCTCGGTGCCTTCGAGGTGGACGTGCGCGGCAACATCGCCTCCTGGATGATCCCCGGC
AAGCTGGTCAAGGGCATGGGCGGCGCCATGGACCTGGTGGCCGGCGCCGAGAACATCATCGTCACCATGACC
CACGCCTCCAAGGACGGCGAGTCCAAGCTGCTGCCGTACTGCACCCTGCCGCTGACCGGTTGCGGTTGCATT
CGCAAGGTGCTCACCGACCTGGCCTACCTGGAGATCGAGGACGGCGCCTTCATCCTCCGCGAGCGCGCCCCC
GGGGTCAGCGTCGAGGAGATCGTGGCGAAGACCGCCGGCAAGCTGATCGTCCCCGAGCACGTGCCGGAAATG
AGTTTCTGA
Translation:
MALTREQMAQRVARELKDGYYVNLGIGIPTLVANYVPEGIDVMLQSENGLLGMGAFPSEAEVDADMINAGKQ
TVTARVGASIFDSAQSFAMIRGGHVDLTVLGAFEVDVRGNIASWMIPGKLVKGMGGAMDLVAGAENIIVTMT
HASKDGESKLLPYCTLPLTGCGCIRKVLTDLAYLEIEDGAFILRERAPGVSVEEIVAKTAGKLIVPEHVPEM
SF*
AnnotationID:3640GeneID:3632
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 18:06:20
Gene Name:
Confidence Code:3
GeneProduct:putative CoA transferase, subunit B
Cell Localization:()
Synonyms:scoB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:succinyl-CoA transferase
Functional Category Confidence Code:5
COGs:COG2057,pfam01144
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68731.1|AE016505_4 (AE016785) CoA-transferase, subunit B, putative [Pseudomonas putida
           KT2440]
          Length = 218

 Score =  388 bits (996), Expect = e-107
 Identities = 197/218 (90%), Positives = 207/218 (94%)

>gb|AAK69426.1|AF276244_1 (AF276244) succinyl-CoA transferase [Serratia marcescens]
          Length = 217

 Score =  382 bits (981), Expect = e-106
 Identities = 192/216 (88%), Positives = 203/216 (93%)

>emb|CAE35690.1| (BX640448) putative coenzyme A transferase subunit [Bordetella
           bronchiseptica]
          Length = 217

 Score =  259 bits (661), Expect = 1e-68
 Identities = 130/213 (61%), Positives = 167/213 (78%), Gaps = 4/213 (1%)








 
Structural Features:
COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit 
[Lipid metabolism]
CD-Length = 225 residues,  96.4% aligned
Score =  287 bits (736), Expect = 7e-79
Identities = 134/217 (61%), Positives = 162/217 (74%), Gaps = 1/217 (0%)

pfam01144, CoA_trans, Coenzyme A transferase.
CD-Length = 218 residues, 100.0% aligned
Score =  134 bits (338), Expect = 1e-32
Identities = 67/218 (30%), Positives = 94/218 (43%), Gaps = 19/218 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7267




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24409




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32726




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3632_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3632
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5821
                           PA2000_tr
                           translation of PA2000
                           218
                           99.99
                           99.99
                           0
                           1103.0
     

     
     
162278
                           gb|AAG05388.1|AE004626_7
                           (AE004626) probable CoA transferase, subunit B [Pseudomonas aeruginosa PAO1]
                           218
                           99.99
                           99.99
                           0
                           1103.0
     

     
     
162279
                           gb|AAN68731.1|AE016505_4
                           (AE016785) CoA-transferase, subunit B, putative [Pseudomonas putida KT2440]
                           218
                           90.36
                           94.95
                           0
                           996.0
     

     
     
162280
                           gb|AAO56931.1|
                           (AE016868) 3-oxoacid CoA-transferase, subunit B family [Pseudomonas syringae pv. tomato str. DC3000]
                           218
                           89.90
                           95.41
                           0
                           995.0
     

     
     
162281
                           gb|AAK69426.1|AF276244_1
                           (AF276244) succinyl-CoA transferase [Serratia marcescens]
                           218
                           88.07
                           93.11
                           1
                           980.0
     

     






      

          
GC ORFID: 46634How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2000Glimmer Score: 

          
Start: 1505983Stop: 1506639

          
Length: 657


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2000 translation of PA2000Homolog Bit Score 429.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8109 (ORF: BLASTX 388.0), t_PA2000 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCACTTACCCGCGAACAGATGGCGCAGCGCGTGGCGCGCGAATTGAAGGACGGCTACTACGTCAACCTC 
GGCATTGGCATCCCGACCCTGGTGGCCAACTACGTGCCGGAGGGCATCGACGTCATGCTCCAGTCGGAGAAC 
GGCCTGCTCGGCATGGGCGCGTTCCCCAGCGAGGCGGAAGTCGACGCCGACATGATCAACGCCGGCAAGCAG 
ACCGTGACCGCTCGCGTCGGCGCGTCGATCTTCGACTCGGCGCAATCCTTCGCCATGATCCGTGGCGGCCAC 
GTCGACCTCACCGTGCTCGGTGCCTTCGAGGTGGACGTGCGCGGCAACATCGCCTCCTGGATGATCCCCGGC 
AAGCTGGTCAAGGGCATGGGCGGCGCCATGGACCTGGTGGCCGGCGCCGAGAACATCATCGTCACCATGACC 
CACGCCTCCAAGGACGGCGAGTCCAAGCTGCTGCCGTACTGCACCCTGCCGCTGACCGGTTGCGGTTGCATT 
CGCAAGGTGCTCACCGACCTGGCCTACCTGGAGATCGAGGACGGCGCCTTCATCCTCCGCGAGCGCGCCCCC 
GGGGTCAGCGTCGAGGAGATCGTGGCGAAGACCGCCGGCAAGCTGATCGTCCCCGAGCACGTGCCGGAAATG 
AGTTTCTGA