ViewGene
Locus Name:
GeneID:
Location:

GeneID:3631
TrivialName: PA14_45090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45090
PAO1 Ortholog Locus:PA1495
Sequence Length:627
Protein Length:208
Start: 4020937
Stop: 4021563
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04884.1|AE004578_6 (AE004578) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 208/208 (100%), Positives = 208/208 (100%)
Sequence:
ATGGGAAGTCTTGACCGGCAGCGCTGGGACGCCCTCTGGCAGCGACTCGGCGGCAACCCGCCGGCGGATGCC
TTCGACGCGCTGCTGGCGGCCTATGGCGGGGCCGACCGGCACTACCACAGCGATCGCCACATCCTCGCCTGC
CTGGAGCACTTCGACCGCTGGCGCCAACTGGCGCGGCGGCCGGACCTGGTGGAGCTGGCGTTGTGGACCCAC
GACCTGGTCTACGACACCCAGCGCCAGGACAACGAGGCCGCCAGCGCCGCCAGCACCGAGCGCTGGCTCGAC
CAGGCCGGGCTGGCGGCGCTGCGGCCGGCCCTGCGCGAACTGATCATGGCCACCTGTCACCAGGCACCGCCG
GGAGACGCCGACGCAGCCCTGGTGGTGGATCTCGACCTCGCCATCCTCGCCGCGCCGGCGCCGGTCTACGCA
CGCTACGAGGCGGACGTCCGCGCCGAATACGCCTGGGTGCCGGAACCGCTGTTCCGCGCCGGGCGCGGCAAG
TTGCTGCGCCAGTTGCTGGAGCAACCGGCGCTGTACCACTGCGAACCGCTGCGGCAGCGCTGGGAGGCCGCC
GCCCGCGCCAACCTGCGCGGTGCCCTGGAGCGCCTGGAACAGCCGGCCTGA
Translation:
MGSLDRQRWDALWQRLGGNPPADAFDALLAAYGGADRHYHSDRHILACLEHFDRWRQLARRPDLVELALWTH
DLVYDTQRQDNEAASAASTERWLDQAGLAALRPALRELIMATCHQAPPGDADAALVVDLDLAILAAPAPVYA
RYEADVRAEYAWVPEPLFRAGRGKLLRQLLEQPALYHCEPLRQRWEAAARANLRGALERLEQPA*
AnnotationID:3639GeneID:3631
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 06:06:51
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1495
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7265




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24407




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3631
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5820
                           PA1495_tr
                           translation of PA1495
                           208
                           99.99
                           99.99
                           0
                           1104.0
     

     
     
162273
                           gb|AAG04884.1|AE004578_6
                           (AE004578) hypothetical protein PA1495 [Pseudomonas aeruginosa PAO1]
                           208
                           99.99
                           99.99
                           0
                           1104.0
     

     
     
162275
                           dbj|BAC71631.1|
                           (AP005037) hypothetical protein [Streptomyces avermitilis MA-4680]
                           225
                           38.66
                           49.33
                           17
                           349.0
     

     
     
162276
                           dbj|BAB47813.1|
                           (AP002994) hypothetical protein [Mesorhizobium loti]
                           226
                           37.16
                           48.67
                           41
                           332.0
     

     
     
162277
                           gb|AAM40618.1|
                           (AE012231) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           226
                           35.39
                           46.01
                           44
                           276.0
     

     






      

          
GC ORFID: 46633How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1495Glimmer Score: 

          
Start: 932972Stop: 932346

          
Length: 627


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1495 translation of PA1495Homolog Bit Score 429.0

          
Other Homologs:  t_PA1495 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGAAGTCTTGACCGGCAGCGCTGGGACGCCCTCTGGCAGCGACTCGGCGGCAACCCGCCGGCGGATGCC 
TTCGACGCGCTGCTGGCGGCCTATGGCGGGGCCGACCGGCACTACCACAGCGATCGCCACATCCTCGCCTGC 
CTGGAGCACTTCGACCGCTGGCGCCAACTGGCGCGGCGGCCGGACCTGGTGGAGCTGGCGTTGTGGACCCAC 
GACCTGGTCTACGACACCCAGCGCCAGGACAACGAGGCCGCCAGCGCCGCCAGCACCGAGCGCTGGCTCGAC 
CAGGCCGGGCTGGCGGCGCTGCGGCCGGCCCTGCGCGAACTGATCATGGCCACCTGTCACCAGGCACCGCCG 
GGAGACGCCGACGCAGCCCTGGTGGTGGATCTCGACCTCGCCATCCTCGCCGCGCCGGCGCCGGTCTACGCA 
CGCTACGAGGCGGACGTCCGCGCCGAATACGCCTGGGTGCCGGAACCGCTGTTCCGCGCCGGGCGCGGCAAG 
TTGCTGCGCCAGTTGCTGGAGCAACCGGCGCTGTACCACTGCGAACCGCTGCGGCAGCGCTGGGAGGCCGCC 
GCCCGCGCCAACCTGCGCGGTGCCCTGGAGCGCCTGGAACAGCCGGCCTGA