ViewGene

Locus Name:
GeneID:
Location:

GeneID:363
TrivialName: PA14_39440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39440
PAO1 Ortholog Locus:PA1941
Sequence Length:1896
Protein Length:631
Start: 3508418
Stop: 3510313
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05329.1|AE004620_8 (AE004620) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 629/631 (99%), Positives = 630/631 (99%)
Sequence:
ATGCGCACCGTGAAAAAGGCTCTGCTGGTTGTCGGCGTGATCGTGCTGGCGGTCGTCGGGGTGGTGGTCTAC
TACGTCGCCAATCCCAACCTGCCCCACTACCAGGCGCCGAGCGAGGTACGCTACCTGCCGCAATGGAAGGAC
GAGGCCCGCCAGCGCTTCTACTACACGCCCCAGGGCACTCTGGTGAAGGGCCTGCACTACGACTGGTTCACC
GCCCTCGAACTGCCCTTCTCCGAAGAACCCTTCGCCGCCCCCGAATACCTCGCCCGCTTCGGCTTCCTCGTC
GATCCGCAGCAGAAGGCCAGCGACCTCAACCCCGGCAACCTGCCGGTGGGCTTCAGCCAGCACCGCGACGAG
AAGACCGGCACCCGCTACCTGGACATCACCTGCGCCGCCTGCCACACCGGCGAACTGCGCTACCAGGGCAAG
TCGCTACGCATCGACGGCGGTGCCGCCATGCATTCCATCGCCGCCACCGTGCCGACCCTGCGCGGCGGCGCC
TTCGGCCAGGCGCTCGGCGCGAGCATGGCCGCCACCTACTACAACCCGTTCAAGTTCAACCGCTTCGCCAGG
AAAGTCCTCGGCGAACGCTACGAACAGGACAAGTCGCAACTGCGCGCCGACTTCAAGGCCGTGCTCGACACC
CTCCTGCGCACCGCCTGGAACGACACCCGCCGCCACCTCTACCCCACCGAGGAAGGCCCCGGCCGCACCGAC
GCCTTCGGGCGCATCGCCAACAGCGTCTTCGGCGATGCCATCGACCCGGGCAACTACCGCGTCGCCAACGCC
CCGGTGAGCTATCCGCAGGTCTGGGACATCTGGAAATTCGACTGGGTGCAATGGAACGGCTCGGCCATGCAG
CCGATGGCGCGCAACATCGGCGAGGCCCTCGGCGTCGGCGCGCGCCTGCAGATCTTCGACGAGCACGGCCAG
CCGCTGCGGGGCGAGCAGCGCTACGCCTCCAGCGTACGCCTGCACGACCTGCACGCCCTGGAAGAAACCCTG
CAACAGCTGAAACCGCCGACCTGGCCGGAAGACCTCTTCGGCCGCATCGACCTGCAACGCGCCTCCCAGGGC
CGCGCCCTGTTCGAAGCCAACTGCGCCTTCTGCCATGCACCCAAGGTGCAACCGGCGGAATACGCCGCCCCC
GGACGCAATCCCGAGTGGCGCATGCACATGGTGCCGACCGAGGTGATCGGCACCGACCCGACCACCGCCGAC
AACATCGCCGACCACCGCTACGACCTGCGCAAGCTCGGCTGGAGCGTCGACGAACTGGCGCGGATGAACGTC
CAGCTGATCGGCGCCGATCCGCAGCAACTCGACCTCTCGCAACTGTCCTCGGCCAAGGGCCTGGCCTACATC
ACCGCCTTCGTCGAGCAGCGCGCCTACCGGGACGCCGGCATCCCGCCGGAACAGCAGAAGACCATGAACGGC
TTCGACCTACCGATCGGCGTACAGGAACTGCGCGCCTACAAGGCCCGCCCGCTGGACGGCGTCTGGGCGACC
CCGCCGTTCCTGCACAACGGCTCGGTGCCCAACCTGTTCCAACTGCTCTCCCCGGCCGCCGAACGCTCGCCG
CAGTTCTACGTCGGCACCTTCGAATTCGATCCGAAATTCGTTGGATTCCGCACCGAGAAATTCCCCGGCGGC
TTCCTCCTCGACACCCGTCTCACCGGCAACCGCAACAGCGGCCACGAATTCCGCGACGGCTGCCGGCAGAAC
GGCGTGATCGGCCGCGCCCTCAGCCCGGAAGAACGCTGGGCGCTGGTGGAATACCTGAAGGTGCTCGGCAAC
CCCGAGTTCGAGCGCCGCCTGGTCCCGGCCCAGACCCCACCCTGGACGCCCGGCCCGAAATGCCCGGCGCCG
GAGCAACGGACCGCGCAACGCTGA
Translation:
MRTVKKALLVVGVIVLAVVGVVVYYVANPNLPHYQAPSEVRYLPQWKDEARQRFYYTPQGTLVKGLHYDWFT
ALELPFSEEPFAAPEYLARFGFLVDPQQKASDLNPGNLPVGFSQHRDEKTGTRYLDITCAACHTGELRYQGK
SLRIDGGAAMHSIAATVPTLRGGAFGQALGASMAATYYNPFKFNRFARKVLGERYEQDKSQLRADFKAVLDT
LLRTAWNDTRRHLYPTEEGPGRTDAFGRIANSVFGDAIDPGNYRVANAPVSYPQVWDIWKFDWVQWNGSAMQ
PMARNIGEALGVGARLQIFDEHGQPLRGEQRYASSVRLHDLHALEETLQQLKPPTWPEDLFGRIDLQRASQG
RALFEANCAFCHAPKVQPAEYAAPGRNPEWRMHMVPTEVIGTDPTTADNIADHRYDLRKLGWSVDELARMNV
QLIGADPQQLDLSQLSSAKGLAYITAFVEQRAYRDAGIPPEQQKTMNGFDLPIGVQELRAYKARPLDGVWAT
PPFLHNGSVPNLFQLLSPAAERSPQFYVGTFEFDPKFVGFRTEKFPGGFLLDTRLTGNRNSGHEFRDGCRQN
GVIGRALSPEERWALVEYLKVLGNPEFERRLVPAQTPPWTPGPKCPAPEQRTAQR*
AnnotationID:372GeneID:363
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 12:12:50
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1941
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:729
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17871
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:363

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
607 PA1941_tr translation of PA1941 631 99.68 99.84 0 3375.0
28794 gb|AAG05329.1|AE004620_8 (AE004620) hypothetical protein PA1941 [Pseudomonas aeruginosa PAO1] 631 99.68 99.84 0 3375.0
608 PA2078_tr translation of PA2078 739 28.28 39.51 223 615.0
28795 gb|AAG05466.1|AE004635_4 (AE004635) hypothetical protein PA2078 [Pseudomonas aeruginosa PAO1] 739 28.28 39.51 223 615.0
GC ORFID: 43365How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1941Glimmer Score:
Start: 1445493Stop: 1443598
Length: 1896
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1941 translation of PA1941Homolog Bit Score 1304.0
Other Homologs: t_PA1941 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCACCGTGAAAAAGGCTCTGCTGGTTGTCGGCGTGATCGTGCTGGCGGTCGTCGGGGTGGTGGTCTAC
TACGTCGCCAATCCCAACCTGCCCCACTACCAGGCGCCGAGCGAGGTACGCTACCTGCCGCAATGGAAGGAC
GAGGCCCGCCAGCGCTTCTACTACACGCCCCAGGGCACTCTGGTGAAGGGCCTGCACTACGACTGGTTCACC
GCCCTCGAACTGCCCTTCTCCGAAGAACCCTTCGCCGCCCCCGAATACCTCGCCCGCTTCGGCTTCCTCGTC
GATCCGCAGCAGAAGGCCAGCGACCTCAACCCCGGCAACCTGCCGGTGGGCTTCAGCCAGCACCGCGACGAG
AAGACCGGCACCCGCTACCTGGACATCACCTGCGCCGCCTGCCACACCGGCGAACTGCGCTACCAGGGCAAG
TCGCTACGCATCGACGGCGGTGCCGCCATGCATTCCATCGCCGCCACCGTGCCGACCCTGCGCGGCGGCGCC
TTCGGCCAGGCGCTCGGCGCGAGCATGGCCGCCACCTACTACAACCCGTTCAAGTTCAACCGCTTCGCCAGG
AAAGTCCTCGGCGAACGCTACGAACAGGACAAGTCGCAACTGCGCGCCGACTTCAAGGCCGTGCTCGACACC
CTCCTGCGCACCGCCTGGAACGACACCCGCCGCCACCTCTACCCCACCGAGGAAGGCCCCGGCCGCACCGAC
GCCTTCGGGCGCATCGCCAACAGCGTCTTCGGCGATGCCATCGACCCGGGCAACTACCGCGTCGCCAACGCC
CCGGTGAGCTATCCGCAGGTCTGGGACATCTGGAAATTCGACTGGGTGCAATGGAACGGCTCGGCCATGCAG
CCGATGGCGCGCAACATCGGCGAGGCCCTCGGCGTCGGCGCGCGCCTGCAGATCTTCGACGAGCACGGCCAG
CCGCTGCGGGGCGAGCAGCGCTACGCCTCCAGCGTACGCCTGCACGACCTGCACGCCCTGGAAGAAACCCTG
CAACAGCTGAAACCGCCGACCTGGCCGGAAGACCTCTTCGGCCGCATCGACCTGCAACGCGCCTCCCAGGGC
CGCGCCCTGTTCGAAGCCAACTGCGCCTTCTGCCATGCACCCAAGGTGCAACCGGCGGAATACGCCGCCCCC
GGACGCAATCCCGAGTGGCGCATGCACATGGTGCCGACCGAGGTGATCGGCACCGACCCGACCACCGCCGAC
AACATCGCCGACCACCGCTACGACCTGCGCAAGCTCGGCTGGAGCGTCGACGAACTGGCGCGGATGAACGTC
CAGCTGATCGGCGCCGATCCGCAGCAACTCGACCTCTCGCAACTGTCCTCGGCCAAGGGCCTGGCCTACATC
ACCGCCTTCGTCGAGCAGCGCGCCTACCGGGACGCCGGCATCCCGCCGGAACAGCAGAAGACCATGAACGGC
TTCGACCTACCGATCGGCGTACAGGAACTGCGCGCCTACAAGGCCCGCCCGCTGGACGGCGTCTGGGCGACC
CCGCCGTTCCTGCACAACGGCTCGGTGCCCAACCTGTTCCAACTGCTCTCCCCGGCCGCCGAACGCTCGCCG
CAGTTCTACGTCGGCACCTTCGAATTCGATCCGAAATTCGTTGGATTCCGCACCGAGAAATTCCCCGGCGGC
TTCCTCCTCGACACCCGTCTCACCGGCAACCGCAACAGCGGCCACGAATTCCGCGACGGCTGCCGGCAGAAC
GGCGTGATCGGCCGCGCCCTCAGCCCGGAAGAACGCTGGGCGCTGGTGGAATACCTGAAGGTGCTCGGCAAC
CCCGAGTTCGAGCGCCGCCTGGTCCCGGCCCAGACCCCACCCTGGACGCCCGGCCCGAAATGCCCGGCGCCG
GAGCAACGGACCGCGCAACGCTGA