ViewGene
Locus Name:
GeneID:
Location:

GeneID:3629
TrivialName: PA14_38930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38930
PAO1 Ortholog Locus:PA1978
Sequence Length:666
Protein Length:221
Start: 3469644
Stop: 3470309
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05366.1|AE004624_5 (AE004624) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 221/221 (100%), Positives = 221/221 (100%)
Sequence:
ATGTACAAGATCCTGATCGCCGACGACCACCCGCTGTTCCGCGAGGCCATCCACAATGTCATCGCCGACGGA
TTCCCCGGCAGCGAAGTGATGGAAACCGCCGACCTCGACAGCGCCCTGGGCCTGACCCAGGAACACGACGAC
CTCGACCTGATCCTGCTCGACCTGAACATGCCCGGCATGCACGGCCTCAACGGCCTGATGAACCTGCGCAAC
GAGGCCCCGACCATTCCCGTGGTTATCGTCTCCGCCGAGCAGGACAAGCAGGTGGTGCTACAGGCCATCACC
TACGGCGCGGTGGGCTTCATCACCAAGTCCTCGCCACGCGCGCAGATGACCGAAGCCATCGAGCAGATCCTC
AACGGCAACGTCTACCTGCCCTCGGACGTGATCCGCACCCAGAAGAGTTCGCCGCGACGCAGCGGCCACGAA
GAACACGGCATCTCCCCGGAACTGCTCCAGGCCCTGACCCGCAAGCAGCTGCTGGTGCTGGAGCGGATGACC
AAGGGCGAGTCGAACAAGCAGATCGCCTACAACCTGGACATCGCCGAGACCACGGTGAAGGCGCACGTCTCG
GCGATCCTGCGCAAGCTCAAGGTACACAACCGGGTCCAGGCGATCCTCAGCGCCGGCGACATCGACTTCGCC
GCCTACCTGCGCCGCTGA
Translation:
MYKILIADDHPLFREAIHNVIADGFPGSEVMETADLDSALGLTQEHDDLDLILLDLNMPGMHGLNGLMNLRN
EAPTIPVVIVSAEQDKQVVLQAITYGAVGFITKSSPRAQMTEAIEQILNGNVYLPSDVIRTQKSSPRRSGHE
EHGISPELLQALTRKQLLVLERMTKGESNKQIAYNLDIAETTVKAHVSAILRKLKVHNRVQAILSAGDIDFA
AYLRR*
AnnotationID:3637GeneID:3629
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 16:04:36
Gene Name:
Confidence Code:3
GeneProduct:putative glycerol regulatory protein
Cell Localization:()
Synonyms:glpR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative DNA-binding response regulator AgmR
Functional Category Confidence Code:5
COGs:COG2197
Secondary Functional Category(ies):two-component regulatory systems
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68273.1|AE016461_9 (AE016784) DNA-binding response regulator AgmR [Pseudomonas putida
           KT2440]
          Length = 221

 Score =  370 bits (951), Expect = e-102
 Identities = 191/221 (86%), Positives = 201/221 (90%)

>dbj|BAB48576.1| (AP002996) probable two-component response regulator [Mesorhizobium
           loti]
          Length = 227

 Score =  178 bits (452), Expect = 2e-44
 Identities = 90/218 (41%), Positives = 135/218 (61%), Gaps = 4/218 (1%)

>gb|AAM43282.1| (AE012528) two-component system regulatory protein [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 222

 Score =  168 bits (426), Expect = 2e-41
 Identities = 92/213 (43%), Positives = 134/213 (62%), Gaps = 6/213 (2%)






 
Structural Features:
COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH 
DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 211 residues,  96.2% aligned
Score =  167 bits (425), Expect = 8e-43
Identities = 83/209 (39%), Positives = 118/209 (56%), Gaps = 6/209 (2%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7261




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24403




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38056




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3629_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3629
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5817
                           PA1978_tr
                           translation of PA1978
                           221
                           99.99
                           99.99
                           0
                           1105.0
     

     
     
162238
                           gb|AAG05366.1|AE004624_5
                           (AE004624) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           221
                           99.99
                           99.99
                           0
                           1105.0
     

     
     
162239
                           gb|AAA25827.1|
                           (M60805) glycerol regulatory protein [Pseudomonas aeruginosa]
                           221
                           99.99
                           99.99
                           0
                           1105.0
     

     
     
162241
                           gb|AAK00900.1|AF315634_1
                           (AF315634) positive regulator AgmR [Pseudomonas putida]
                           221
                           86.42
                           90.49
                           0
                           951.0
     

     
     
162240
                           gb|AAN68273.1|AE016461_9
                           (AE016784) DNA-binding response regulator AgmR [Pseudomonas putida KT2440]
                           221
                           86.42
                           90.95
                           0
                           951.0
     

     






      

          
GC ORFID: 46631How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1978Glimmer Score: 

          
Start: 1484267Stop: 1483602

          
Length: 666


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1978 translation of PA1978Homolog Bit Score 430.0

          
Other Homologs:  t_PA3604 (ORF: BLASTX 162.0), psyr_15may02_Scaffold3_revised_gene4663 (ORF: BLASTX 155.0), t_PA1978 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACAAGATCCTGATCGCCGACGACCACCCGCTGTTCCGCGAGGCCATCCACAATGTCATCGCCGACGGA 
TTCCCCGGCAGCGAAGTGATGGAAACCGCCGACCTCGACAGCGCCCTGGGCCTGACCCAGGAACACGACGAC 
CTCGACCTGATCCTGCTCGACCTGAACATGCCCGGCATGCACGGCCTCAACGGCCTGATGAACCTGCGCAAC 
GAGGCCCCGACCATTCCCGTGGTTATCGTCTCCGCCGAGCAGGACAAGCAGGTGGTGCTACAGGCCATCACC 
TACGGCGCGGTGGGCTTCATCACCAAGTCCTCGCCACGCGCGCAGATGACCGAAGCCATCGAGCAGATCCTC 
AACGGCAACGTCTACCTGCCCTCGGACGTGATCCGCACCCAGAAGAGTTCGCCGCGACGCAGCGGCCACGAA 
GAACACGGCATCTCCCCGGAACTGCTCCAGGCCCTGACCCGCAAGCAGCTGCTGGTGCTGGAGCGGATGACC 
AAGGGCGAGTCGAACAAGCAGATCGCCTACAACCTGGACATCGCCGAGACCACGGTGAAGGCGCACGTCTCG 
GCGATCCTGCGCAAGCTCAAGGTACACAACCGGGTCCAGGCGATCCTCAGCGCCGGCGACATCGACTTCGCC 
GCCTACCTGCGCCGCTGA